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October 2018

Table of Contents - PeerJ (Biology Articles)

A new tyrannosaurid from the Upper Cretaceous Menefee Formation

Fig 1: Frontals of UMNH VP 28348 in rostral view

October 9, 2018

A new tyrannosaurid from the Upper Cretaceous Menefee Formation

Researchers report a new tyrannosaurid represented by an associated skeleton from the lower Campanian Allison Member of the Menefee Formation of New Mexico. The specimen is the holotype of the new genus and species Dynamoterror dynastes.

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October 31, 2018

SLiMEnrich: computational assessment of protein–protein interaction data as a source of domain-motif interactions

Sobia Idrees, Åsa Pérez-Bercoff, Richard J. Edwards

https://doi.org/10.7717/peerj.5858 PubMed 30402352

October 31, 2018

BioInstaller: a comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

Jianfeng Li, Bowen Cui, Yuting Dai, Ling Bai, Jinyan Huang

https://doi.org/10.7717/peerj.5853 PubMed 30402350

October 30, 2018

HAHap: a read-based haplotyping method using hierarchical assembly

Yu-Yu Lin, Ping Chun Wu, Pei-Lung Chen, Yen-Jen Oyang, Chien-Yu Chen

https://doi.org/10.7717/peerj.5852 PubMed 30397550

October 30, 2018

Comparative functional analysis of proteins containing low-complexity predicted amyloid regions

Bandana Kumari, Ravindra Kumar, Vipin Chauhan, Manish Kumar

https://doi.org/10.7717/peerj.5823 PubMed 30397544

October 30, 2018

Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing

Jittima Piriyapongsa, Pavita Kaewprommal, Sirintra Vaiwsri, Songtham Anuntakarun, Warodom Wirojsirasak, Prapat Punpee, Peeraya Klomsa-ard, Philip J. Shaw, Wirulda Pootakham, Thippawan Yoocha, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Sissades Tongsima, Somvong Tragoonrung

https://doi.org/10.7717/peerj.5818 PubMed 30397543

October 29, 2018

Ensemble learning for detecting gene-gene interactions in colorectal cancer

Faramarz Dorani, Ting Hu, Michael O. Woods, Guangju Zhai

https://doi.org/10.7717/peerj.5854 PubMed 30397551

October 24, 2018

Integrative analysis of microRNA and mRNA expression profiles in fetal rat model with anorectal malformation

Hui Xiao, Rui Huang, Mei Diao, Long Li, XiaoDai Cui

https://doi.org/10.7717/peerj.5774 PubMed 30386697

October 23, 2018

Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities

Ella T. Sieradzki, Jed A. Fuhrman, Sara Rivero-Calle, Laura Gómez-Consarnau