October 2017

Table of Contents - PeerJ (Biology Articles)

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Machine learning to analyze colon glands

Malignant colorectal cancer

October 3, 2017

Machine learning to analyze colon glands

Due to the large variability of biological tissue, machine learning techniques have shown superior performance over conventional image processing methods. Here, researchers present a deep neural network-based approach for segmentation and classification of glands in tissue of benign and malignant colorectal cancer.

- read article

October 4, 2017
Accuracy of microbial community diversity estimated by closed- and open-reference OTUs
https://doi.org/10.7717/peerj.3889 PubMed 29018622
October 24, 2017
A massive update of non-indigenous species records in Mediterranean marinas
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https://doi.org/10.7717/peerj.3954 PubMed 29085752
October 3, 2017
Segmentation and classification of colon glands with deep convolutional neural networks and total variation regularization
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https://doi.org/10.7717/peerj.3874 PubMed 29018612
October 12, 2017
The complete chloroplast genome sequence of strawberry (Fragaria  × ananassa Duch.) and comparison with related species of Rosaceae
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https://doi.org/10.7717/peerj.3919 PubMed 29038765
October 20, 2017
Oxygen-limited metabolism in the methanotroph Methylomicrobium buryatense 5GB1C
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https://doi.org/10.7717/peerj.3945 PubMed 29062611
October 16, 2017
Tolerance: the forgotten child of plant resistance
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https://doi.org/10.7717/peerj.3934 PubMed 29062607
October 24, 2017
Norwegian honey bees surviving Varroa destructor mite infestations by means of natural selection
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https://doi.org/10.7717/peerj.3956 PubMed 29085753
October 24, 2017
Measuring language lateralisation with different language tasks: a systematic review
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https://doi.org/10.7717/peerj.3929 PubMed 29085748
October 20, 2017
Influence of current climate, historical climate stability and topography on species richness and endemism in Mesoamerican geophyte plants
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https://doi.org/10.7717/peerj.3932 PubMed 29062605
October 6, 2017
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
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https://doi.org/10.7717/peerj.3893 PubMed 29372115
October 31, 2017
Record breaking achievements by spiders and the scientists who study them
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https://doi.org/10.7717/peerj.3972 PubMed 29104823
October 24, 2017
Statins: antimicrobial resistance breakers or makers?
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https://doi.org/10.7717/peerj.3952 PubMed 29085751
October 5, 2017
Integration of lncRNA–miRNA–mRNA reveals novel insights into oviposition regulation in honey bees
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https://doi.org/10.7717/peerj.3881 PubMed 29018616
October 17, 2017
Bacterial and fungal communities respond differently to varying tillage depth in agricultural soils
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https://doi.org/10.7717/peerj.3930 PubMed 29062604
October 13, 2017
Multigene phylogeny of the scyphozoan jellyfish family Pelagiidae reveals that the common U.S. Atlantic sea nettle comprises two distinct species (Chrysaora quinquecirrha and C. chesapeakei)
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https://doi.org/10.7717/peerj.3863 PubMed 29043109
October 5, 2017
Clone wars: asexual reproduction dominates in the invasive range of Tubastraea spp. (Anthozoa: Scleractinia) in the South-Atlantic Ocean
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https://doi.org/10.7717/peerj.3873 PubMed 29018611
October 3, 2017
Development and validation of near-infrared spectroscopy for the prediction of forage quality parameters in Lolium multiflorum
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https://doi.org/10.7717/peerj.3867 PubMed 29018608
October 17, 2017
How to normalize metatranscriptomic count data for differential expression analysis
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https://doi.org/10.7717/peerj.3859 PubMed 29062598
October 17, 2017
lncRNA H19 is involved in TGF-β1-induced epithelial to mesenchymal transition in bovine epithelial cells through PI3K/AKT Signaling Pathway
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https://doi.org/10.7717/peerj.3950 PubMed 29062612
October 26, 2017
Erwinia amylovora psychrotrophic adaptations: evidence of pathogenic potential and survival at temperate and low environmental temperatures
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https://doi.org/10.7717/peerj.3931 PubMed 29085749
October 20, 2017
The benefits of Tai Chi and brisk walking for cognitive function and fitness in older adults
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https://doi.org/10.7717/peerj.3943 PubMed 29062610
October 4, 2017
Impact of land reclamation and agricultural water regime on the distribution and conservation status of the endangered Dryophytes suweonensis
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https://doi.org/10.7717/peerj.3872 PubMed 29018610
October 13, 2017
Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane’s “species minimum” concept
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https://doi.org/10.7717/peerj.3687 PubMed 29043106
October 10, 2017
Illegal use of natural resources in federal protected areas of the Brazilian Amazon
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https://doi.org/10.7717/peerj.3902 PubMed 29038758
October 19, 2017
The neuroprotective effect of nicotine in Parkinson’s disease models is associated with inhibiting PARP-1 and caspase-3 cleavage
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https://doi.org/10.7717/peerj.3933 PubMed 29062606
Machine learning to analyze colon glands

Malignant colorectal cancer

October 3, 2017

Machine learning to analyze colon glands

Due to the large variability of biological tissue, machine learning techniques have shown superior performance over conventional image processing methods. Here, researchers present a deep neural network-based approach for segmentation and classification of glands in tissue of benign and malignant colorectal cancer.

- read article

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I told my colleagues that PeerJ is a journal where they need to publish if they want their paper to be published quickly and with the strict peer review expected from a good journal.
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