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September 2017

Table of Contents - PeerJ (Biology Articles)

Automated classification of tropical shrub species

Leaf samples

September 12, 2017

Automated classification of tropical shrub species

Researchers have developed a hybrid ‘leaf shape’ and machine learning approach to build an automated identification system for tropical shrubs.

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September 21, 2017

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

Simon Roux, Joanne B. Emerson, Emiley A. Eloe-Fadrosh, Matthew B. Sullivan

https://doi.org/10.7717/peerj.3817 PubMed 28948103

September 18, 2017

The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species

Caihui Chen, Yongjie Zheng, Sian Liu, Yongda Zhong, Yanfang Wu, Jiang Li, Li-An Xu, Meng Xu

https://doi.org/10.7717/peerj.3820 PubMed 28948105

September 11, 2017

Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence

Runze Wang, Meiling Ming, Jiaming Li, Dongqing Shi, Xin Qiao, Leiting Li, Shaoling Zhang, Jun Wu

https://doi.org/10.7717/peerj.3776 PubMed 28924499

September 7, 2017

MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes

Abraham G. Moller, Chun Liang

https://doi.org/10.7717/peerj.3788 PubMed 28894651

September 19, 2017

Genome-wide identification and characterization of aquaporin gene family in Beta vulgaris

Weilong Kong, Shaozong Yang, Yulu Wang, Mohammed Bendahmane, Xiaopeng Fu

https://doi.org/10.7717/peerj.3747 PubMed 28948097

September 26, 2017

Ananke: temporal clustering reveals ecological dynamics of microbial communities

Michael W. Hall, Robin R. Rohwer, Jonathan Perrie, Katherine D. McMahon, Robert G. Beiko

https://doi.org/10.7717/peerj.3812 PubMed 28966891

September 4, 2017

Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine

Ravindra Kumar, Bandana Kumari, Manish Kumar

https://doi.org/10.7717/peerj.3561 PubMed 28890846

September 15, 2017

Genomic analysis of P elements in natural populations of Drosophila melanogaster

Casey M. Bergman, Shunhua Han, Michael G. Nelson, Vladyslav Bondarenko, Iryna Kozeretska

https://doi.org/10.7717/peerj.3824 PubMed 28929030

September 12, 2017

Automated classification of tropical shrub species: a hybrid of leaf shape and machine learning approach

Miraemiliana Murat, Siow-Wee Chang, Arpah Abu, Hwa Jen Yap, Kien-Thai Yong

https://doi.org/10.7717/peerj.3792 PubMed 28924506

September 28, 2017

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

Tomasz Dzida, Mudassar Iqbal, Iryna Charapitsa, George Reid, Henk Stunnenberg, Filomena Matarese, Korbinian Grote, Antti Honkela, Magnus Rattray

https://doi.org/10.7717/peerj.3742 PubMed 28970965

September 15, 2017

Fish Ontology framework for taxonomy-based fish recognition

Najib M. Ali, Haris A. Khan, Amy Y-Hui Then, Chong Ving Ching, Manas Gaur, Sarinder Kaur Dhillon

https://doi.org/10.7717/peerj.3811 PubMed 28929028

September 1, 2017

A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog

Santiago Montero-Mendieta, Manfred Grabherr, Henrik Lantz, Ignacio De la Riva, Jennifer A. Leonard, Matthew T. Webster, Carles Vilà

https://doi.org/10.7717/peerj.3702 PubMed 28879061

September 12, 2017

Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data

Nathan D. Olson, Justin M. Zook, Jayne B. Morrow, Nancy J. Lin

https://doi.org/10.7717/peerj.3729 PubMed 28924496

September 19, 2017

Analysis of drug binding pockets and repurposing opportunities for twelve essential enzymes of ESKAPE pathogens

Sadia Naz, Tony Ngo, Umar Farooq, Ruben Abagyan

https://doi.org/10.7717/peerj.3765 PubMed 28948099

September 15, 2017

Association of rs1801157 single nucleotide polymorphism of CXCL12 gene in breast cancer in Pakistan and in-silico expression analysis of CXCL12–CXCR4 associated biological regulatory network

Samra Khalid, Rumeza Hanif

https://doi.org/10.7717/peerj.3822 PubMed 28929029

September 27, 2017

Estimating the age of Heliconius butterflies from calibrated photographs

Denise Dalbosco Dell’Aglio, Derya Akkaynak, W. Owen McMillan, Chris D. Jiggins

https://doi.org/10.7717/peerj.3821 PubMed 28970967

September 8, 2017

Variance component testing for identifying differentially expressed genes in RNA-seq data

Sheng Yang, Fang Shao, Weiwei Duan, Yang Zhao, Feng Chen

https://doi.org/10.7717/peerj.3797 PubMed 28929020

September 26, 2017

The Legionella pneumophila effector Lpg1137 is a homologue of mitochondrial SLC25 carrier proteins, not of known serine proteases

Marcin Gradowski, Krzysztof Pawłowski

https://doi.org/10.7717/peerj.3849 PubMed 28966893

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September 2017

Table of Contents - PeerJ (Biology Articles)

Leaf samples

Automated classification of tropical shrub species

Leaf samples

Automated classification of tropical shrub species

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