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Extensive analysis of native and non-native Centaurea solstitialis L. populations across the world shows no traces of polyploidization

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#CSESpubs @frenchkris007 Native & non-native Centaurea solstitialis L. pops across world show no trace of polyploidy https://t.co/U1kRb8uZug
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Introduction

Changes in ploidy level have been reported to be important for the invasive success of some plants species (Te Beest et al., 2011), by altering morphological, physiological and ecological parameters which can confer hybrid vigor, stress resistance, competitive advantages, or increased phenotypic plasticity, like in the case of the North American tetraploids of Centaurea stoebe L. (Hahn, Buckley & Müller-Schärer, 2012). Additionally, there are a series of associated “genome size constrained traits”, related mostly to reproduction and dispersal, which dictate the ecological niche a species can access (Te Beest et al., 2011). In contrast, several studies support the hypothesis that a smaller genome can contribute to some species invasive potential by boosting early plant growth and enhancing competitive ability (Bennett, Leitch & Hanson, 1998; Grotkopp et al., 2004; Beaulieu et al., 2007; Lavergne, Muenke & Molofsky, 2010; Suda et al., 2015). For instance, Phalaris arundinacea L. (reed canary grass, Poaceae) in the USA underwent a quick and significant reduction in genome size compared to the native European genotype, which was correlated with some advantageous phenotypic effects and enhanced aggressiveness (Lavergne, Muenke & Molofsky, 2010). A list comparing the ploidy level of 128 worst invasive plant species worldwide, was recently made available by Te Beest et al. (2011), indicating that a quarter of them possess at least two different ploidy levels. An interesting example is C. stoebe (spotted knapweed) which occurs both as a diploid and tetraploid, with only the latter cytotype becoming invasive in the Western parts of the USA (Mráz et al., 2011). However, for many invasive species, ploidy levels and genome size are unknown or have not been thoroughly investigated.

Centaurea L. is one of the most species rich genera in the Asteraceae (Bremer, 1994). Numerous Centaurea species have been introduced into new non-native regions, where many of them have become invasive. For instance, the US Federal Noxious Weeds list (USDA, NRCS, The PLANTS Database, 2017), includes no fewer than 13 taxa, but ploidy level for many of these is unknown or uncertain. In particular, C. solstitialis is a Eurasian native annual herb which was introduced into the Americas and Australia during the last two centuries (Barker et al., 2017) and became an impactful invader in the former case. In the invaded ranges, C. solstitialis forms dense stands that displace native plants species and reduce considerably livestock grazing capacity and forage value (Eagle et al., 2007). It alters ecosystem functions by depleting soil water and nutrients through an extensive root system (DiTomaso, 2000), and can cause a neurological disorder in horses similar to human Parkinson (Chang et al., 2011). As an economically important plant, the species has been the subject of intensive research, and significant differentiation between native and non-native ranges have been reported for plant size (Eriksen et al., 2012; Graebner, Callaway & Montesinos, 2012; García et al., 2013; Dlugosch et al., 2015), growth rates (Graebner, Callaway & Montesinos, 2012), germination (Hierro et al., 2009), competitive ability (Montesinos & Callaway, 2017), and reproduction (Montesinos, Santiago & Callaway, 2012), among others. Such changes suggest diverging local adaptation occurring among native and non-native ranges, and hypothetical changes in genome size and ploidy level could be potentially responsible for at least some of the observed trait-shifts.

Until now, only three genome size estimates were available in the literature for C. solstitialis: two from the native range (Bulgaria: 1.74 pg/2C, one accession, in Bancheva & Greilhuber, 2006; and Croatia: 1.95 pg/2C, five accessions, in Carev et al., 2017) and another from an invasive population in western USA: 1.66 pg/2C, thirty accessions (Miskella, 2014). Based on these few studies, C. solstitialis had been reported to be diploid (Dlugosch et al., 2013; Rice et al., 2015) with 2n = 2x = 16 chromosomes. However, records of 2n = 2x = 18 chromosomes were published more than 30 years ago from the native range of Bulgaria (Jasiewicz & Mizianty, 1975; Kuzmanov, Jurukova-Grancarova & Georgieva, 1990) and recently from one accession from Sicily and the other one from Sardinia (Widmer et al., 2007). Furthermore, Inceer, Hayirlioglu-Ayaz & Ozcan (2007) reported tetraploids in seeds (single accession) sampled in northern Turkey, but none of those observations, made in only a handful of individuals, have been confirmed since then. Consequently, it was still unclear whether ploidy could have played a role in at least some of the C. solstitialis invaded ranges. To fill this knowledge gap for such an important species, we aimed to thoroughly sample and assess C. solstitialis ploidy level and genome size in a representative number of populations from around the world, including native Turkey, the ancestral origin of the species; native Spain, the main source of American populations; and all the known non-native regions represented by Argentina, Chile, USA and Australia.

Methods

Seed collection

A total of 477 accessions from 52 natural populations (Table S1) of C. solstitialis were investigated in this study, for genome size and ploidy level assessment. Within the native area, we sampled ten populations from Turkey, near the Caucasus region, where high genetic diversity has been detected, and is regarded as the site of origin of the species (Wagenitz, 1955; Gerlach, 1997a; Uygur et al., 2004; Dlugosch et al., 2013; Eriksen et al., 2014), and ten populations from Spain, considered as the primary source of seeds to have colonized Chile and Argentina (Hijano & Basigalup, 1995; Eriksen et al., 2012; Eriksen et al., 2014; Dlugosch et al., 2013; Barker et al., 2017) in the nineteenth century (Gerlach, 1997b). For the non-native regions, we included ten populations from Argentina and California, eight from Australia and four from Chile. Seeds were extracted from mature flower heads collected in the wild from ten individuals per population between 2009 and 2014. Ten seeds from each individual were germinated in plant growing trays, under common greenhouse conditions, in early spring 2016 at the Botanical Garden of the University of Coimbra, Portugal.

Flow cytometry

Young and intact leaves of 4–6 weeks-old plants were sampled and screened by flow cytometry. Since analyses were based on leaves of small plants, which were destroyed by leaf sampling, no voucher specimens could be collected. Nuclei were isolated following the chopping method of Galbraith et al. (1983). Briefly, about 1 cm2 of leaf tissue was co-chopped with a razor blade together with the same amount of reference standard (Raphanus sativus L. ‘Saxa’, 2C = 1.11 pg, Doležel, Sgorbati & Lucretti, 1992) in 1 mL of woody plant buffer (WPB): 0.2 M Tris×HCl, 4 mM MgCl2×6H2O, 2 mM EDTA Na2×2H2O, 86 mM NaCl, 10 mM sodium metabisulfite, 1% polyvinylpyrrolidone (PVP-10) (w/v) and 1% Triton X-100 (v/v), with pH of the buffer adjusted to 7.5 (Loureiro et al., 2007). The resulting homogenate was filtered through a 50 μm nylon filter into a sample tube to remove large debris. Nuclei were stained with 50 mg/mL propidium iodide (PI; Fluka, Buchs, Switzerland), and 50 mg/ml of RNAse (Fluka, Buchs, Switzerland) was added to prevent the staining of double stranded RNA. Samples were kept at room temperature and analyzed immediately on a Partec CyFlow Space flow cytometer (Partec GmbH, Görlitz, Germany) equipped with a 532 nm green solid-state laser, operating at 30 mW.

Data collection and analysis

Results were acquired using Partec FloMax software (v2.4d) (Partec GmbH, Münster, Germany) in the form of six graphics: fluorescence pulse integral in linear scale (FL); forward light scatter (FS) vs. side light scatter (SS), both in logarithmic (log) scale; FL vs. time; FL vs. fluorescence pulse height; FL vs. FS in log scale and FL vs. SS in log scale. Mean fluorescence values and coefficient of variation (CV value) of the fluorescence of both sample and standard were obtained for at least 1,300 nuclei in each G1 peak, whenever possible. Samples with CV values above 5% were discarded, prepared and ran again. At least three individuals from every population were used to estimate genome size (Table S2), in different days, to account for the variation generated by the flow cytometer. The remaining individuals were analyzed in pool (three or four individuals) to determine ploidy level (Table S2), only. The absolute DNA content of a sample was calculated based on the following formula: 2C nuclear DNA content of the sample   = (sample G1 peak mean)/(standard G1 peak mean) × 2C DNA content of standard. Descriptive statistics were calculated for genome size data (mean, standard deviation of the mean, standard error, coefficient of variation and minimum and maximum values) using Microsoft Excel 2016. Differences in average genome size values among regions were assessed by means of Linear Mixed-Effect Models with the formulation of Laird & Ware (1982), with a region as fixed factor and population within region as a random nested factor, in R-3.2.0 (R Development Core Team, 2010). Data was plotted in BoxPlotR (Spitzer et al., 2014).

Results

Analysis of fresh leaf tissue sampled from seedlings germinated from wild seeds of individuals from 52 populations from Turkey, Spain, Argentina, Chile, USA and Australia (Table S1), showed no significant differences in genome size (F5,44 = 0.58; p = 0.716) among regions (Fig. 1). All individuals (N = 477) were found to be diploid, presumably with 2n = 16 chromosomes. Average genome size ranged from 1.70 pg/2C (SD = 0.06 pg) in Australia and Spain (SD = 0.06 pg) to 1.71 pg/2C (SD = 0.06 pg) in Chile, 1.72 pg/2C (SD = 0.06 pg) in Argentina and California (SD = 0.07 pg) and 1.73 pg/2C (SD = 0.07 pg) in Turkey (Table 1).

Comparison of genome size among native and non-native genotypes of Centaurea solstitialis.

Figure 1: Comparison of genome size among native and non-native genotypes of Centaurea solstitialis.

Black center lines represent the medians, crosses indicate sample means, box limits indicate the 25th and 75th percentiles, whiskers extend 1.5 times the interquartile range from the 25th and 75th percentiles, bars show 95% confidence intervals of the means and outliers are represented by empty dots. Width of the boxes is proportional to the square root of sample size, n = 26, 28, 29, 12, 30, 24 sample points.

Genome size variation among populations within regions (Table S1) was also not significantly different, as indicated by very small standard deviations for the intercept and the residual obtained for the random effects (SDintercept = 0.024; SDresidual = 0.063).

Discussion

We found no traces of polyploidization events in the C. solstitialis populations investigated and geographic differences in genome size were negligible.

A previous record of isolated tetraploids (one accession) in Northern Turkey (Inceer, Hayirlioglu-Ayaz & Ozcan, 2007) is intriguing, since further genomic sampling in the area (e.g., less than 40 km from the initial site, Barker et al., 2017) did not validate the findings. Further investigation is also required to clarify the reported putative hybridization (Barker et al., 2017) with Centaurea nicaeensis L . (2n = 20chromosomes, Guinochet & Foissac, 1962), since inter-specific hybridization does not seem to have played a significant role in the past invasion history of C. solstitialis (Barker et al., 2017). Formerly, a single natural hybrid of Centaurea ×moncktonii CE Britton and C. solstitialis was described from Oregon, USA (Roché & Susanna, 2010) and found to be a sterile triploid (Miskella, 2014).

Table 1:
Genome size estimations in Centaurea solstitialis across the six sampled regions.
Region Genome size (2C, pg) N
Mean SD SE Min Max
Argentina 1.727 0.067 0.012 1.53 1.84 29
Australia 1.705 0.061 0.012 1.59 1.83 24
California 1.727 0.074 0.013 1.59 1.85 30
Chile 1.717 0.065 0.018 1.59 1.81 12
Spain 1.709 0.069 0.013 1.57 1.83 28
Turkey 1.737 0.070 0.013 1.60 1.88 26
Total 1.720 0.068 0.014 1.57 1.84 149
DOI: 10.7717/peerj.3531/table-1

Notes:

Values are given as mean, standard deviation and standard error of the mean. The minimum and maximum values and the number of analyzed individuals (N) for genome size estimations are also provided.

The genome size value we obtained for California (1.72 pg/2C, SD = 0.07 pg) was similar to the one previously reported for Southwestern Oregon (1.66 pg/2C, SD = 0.07 pg), by Miskella (2014) and, overall, genome sizes were similar among the six world regions.

In conclusion, our thorough sampling of the most representative native and non-native populations across the world’s distribution of C. solstitialis indicates that its invasive success is not due to changes in genome size or ploidy level. We cannot discard that some individuals in some unsampled populations could present some degree of polyploidy, but their role in invasive success, to date, would have been of minor importance.

Supplemental Information

Geographic locations of Centaurea solstitialis populations investigated and their average genome size values

DOI: 10.7717/peerj.3531/supp-1

Genome size and coefficient of variation values for every individual analyzed

DOI: 10.7717/peerj.3531/supp-2