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Jens Allmer
PeerJ Author & Reviewer
405 Points

Contributions by role

Author 335
Preprint Author 35
Reviewer 35
Questions 5

Contributions by subject area

Biochemistry
Bioinformatics
Computational Science
Computational Biology
Genomics
Plant Science
Algorithms and Analysis of Algorithms
Genetics
Molecular Biology
Zoology
Data Mining and Machine Learning
Emerging Technologies
Mobile and Ubiquitous Computing
World Wide Web and Web Science
Software Engineering

By Q&A topic

Data-mining-and-machine-learning
Emerging-technologies
Mobile-and-ubiquitous-computing
World-wide-web-and-web-science
Software-engineering

Jens Allmer

PeerJ Author & Reviewer

Summary

Jens Allmer is Full Professor for Medical Informatics and Bioinformatics at the University of Applied Sciences, HRW, Mülheim an der Ruhr, Germany. He previously held positions of Cluster Leader (Wageningen University and Research, Wageningen, Netherlands, 2017-2018), Assistant and Associate Professor (Izmir Institute of Technology, Izmir, Turkey, 2008-2016). Prof. Allmer received his PhD (2006) in Biology with great honor from the University of Münster where he also obtained his MSc. In 2010 he was selected the outstanding young scientist for bioinformatics from the Turkish Academy of Sciences (TÜBA). Prof. Allmer published more than 80 manuscripts in peer reviewed journals with a cumulative impact factor above 130. He also received more than 650,000 Euros in funding.
Prof. Allmer’s research interests have covered most OMICS areas. Currently, his main focus is on microRNA regulation and the use of microRNAs in pathogen-host communication. For this, he applies and extends machine learning paradigms to make them more applicable to problems in bioinformatics.

Bioinformatics Computational Biology Data Mining & Machine Learning Databases Genomics

Past or current institution affiliations

Izmir Institute of Technology

Work details

Professor

Hochschule Ruhr West (University of Applied Sciences)
February 2019
Medical Informatics and Bioinformatics

Websites

  • Jens Allmer
  • Google Scholar
  • PubMed Search

PeerJ Contributions

  • Articles 3
  • Preprints 1
  • Reviewed 1
  • Questions 1
October 21, 2020
DNMSO; an ontology for representing de novo sequencing results from Tandem-MS data
Savaş Takan, Jens Allmer
https://doi.org/10.7717/peerj.10216 PubMed 33150092
March 29, 2017
Delineating the impact of machine learning elements in pre-microRNA detection
Müşerref Duygu Saçar Demirci, Jens Allmer
https://doi.org/10.7717/peerj.3131 PubMed 28367373
June 21, 2016
The impact of feature selection on one and two-class classification performance for plant microRNAs
Waleed Khalifa, Malik Yousef, Müşerref Duygu Saçar Demirci, Jens Allmer
https://doi.org/10.7717/peerj.2135 PubMed 27366641
February 19, 2016 - Version: 1
Exact pattern matching: Adapting the Boyer-Moore algorithm for DNA searches
Jens Allmer
https://doi.org/10.7287/peerj.preprints.1758v1

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

July 10, 2020
Analysis of conserved miRNAs in cynomolgus macaque genome using small RNA sequencing and homology searching
Xia Huang, Shijia Li, Xiaoming Liu, Shuting Huang, Shuang Li, Min Zhuo
https://doi.org/10.7717/peerj.9347 PubMed 32728489

1 Question

1
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