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PeerJ Editor & Reviewer

2,795 Points

Contributions by role

Contributions by subject area

Atsushi Fukushima

PeerJ Editor & Reviewer

Summary

I am a professor at Kyoto Prefectural University. My current research interests focus on characterization of metabolic regulatory networks and integrated analysis of multi-omics data in plants. I am a member of the editorial board for BMC Genomics, Plant Methods, Frontiers in Plant Science, Plants, BioTech, and PeerJ.

Bioinformatics Computational Biology Data Mining & Machine Learning Data Science Databases Genomics Plant Science Statistics

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

Kyoto Prefectural University

Work details

Professor

Kyoto Prefectural University

October 2021

Graduate School of Life and Environmental Sciences

Senior Scientist

RIKEN

October 2020 - September 2021

Center for Sustainable Resource Science

Websites

PeerJ Contributions

Edited 17

Academic Editor on

September 22, 2022

Comparative analysis of combined phosphorus and drought stress-responses in two winter wheat

Xiangchi Zhang, Chao Li, Weidan Lu, Xiaoli Wang, Bin Ma, Kaiyong Fu, Chunyan Li, Cheng Li

https://doi.org/10.7717/peerj.13887 PubMed 36168435

August 10, 2022

Expression dynamics of metabolites in diploid and triploid watermelon in response to flooding

Nan He, Muhammad Jawad Umer, Pingli Yuan, Weiwei Wang, Hongju Zhu, Shengjie Zhao, Xuqiang Lu, Yan Xing, Chengsheng Gong, Wenge Liu, Xiaowu Sun

https://doi.org/10.7717/peerj.13814

July 12, 2022

Comparative full-length transcriptome analysis by Oxford Nanopore Technologies reveals genes involved in anthocyanin accumulation in storage roots of sweet potatoes (Ipomoea batatas L.)

Jun Xiong, Xiuhua Tang, Minzheng Wei, Wenjin Yu

https://doi.org/10.7717/peerj.13688 PubMed 35846886

July 4, 2022

Metabolome and transcriptome profiling reveal regulatory network and mechanism of flavonoid biosynthesis during color formation of Dioscorea cirrhosa L.

Lin Yan, Haijun Yang, Qiang Ye, Zhihua Huang, Hongying Zhou, Dafang Cui

https://doi.org/10.7717/peerj.13659 PubMed 35811818

June 29, 2022

Integrated transcriptome and metabolome analyses revealed regulatory mechanisms of flavonoid biosynthesis in Radix Ardisia

Chang Liu, Jie Pan, Zhi-Gang Yin, Tingting Feng, Jiehong Zhao, Xiu Dong, Ying Zhou

https://doi.org/10.7717/peerj.13670 PubMed 35789656

June 24, 2022

A combined test for feature selection on sparse metaproteomics data—an alternative to missing value imputation

Sandra Plancade, Magali Berland, Mélisande Blein-Nicolas, Olivier Langella, Ariane Bassignani, Catherine Juste

https://doi.org/10.7717/peerj.13525 PubMed 35769140

March 18, 2022

Transcriptomics analysis of field-droughted pear (Pyrus spp.) reveals potential drought stress genes and metabolic pathways

Sheng Yang, Mudan Bai, Guowei Hao, Huangping Guo, Baochun Fu

https://doi.org/10.7717/peerj.12921 PubMed 35321406

March 14, 2022

Integration of the metabolome and transcriptome reveals indigo biosynthesis in Phaius flavus flowers under freezing treatment

Yi-Ming Zhang, Yong Su, Zhong-wu Dai, Meng Lu, Wei Sun, Wei Yang, Sha-Sha Wu, Zhi-Ting Wan, Hui-Hua Wan, Junwen Zhai

https://doi.org/10.7717/peerj.13106 PubMed 35310166

February 24, 2022

Comparative transcriptomics analysis of contrasting varieties of Eucalyptus camaldulensis reveals wind resistance genes

Xiuhua Shang, Peijian Zhang, Guo Liu, Ni Zhan, Zhihua Wu

https://doi.org/10.7717/peerj.12954 PubMed 35233295

February 21, 2022

Comparative analyses of chloroplast genomes in ‘Red Fuji’ apples: low rate of chloroplast genome mutations

Haoyu Miao, Jinbo Bao, Xueli Li, Zhijie Ding, Xinmin Tian

https://doi.org/10.7717/peerj.12927 PubMed 35223207

January 4, 2022

RNA sequencing-based exploration of the effects of blue laser irradiation on mRNAs involved in functional metabolites of D. officinales

Hansheng Li, Yuqiang Qiu, Gang Sun, Wei Ye

https://doi.org/10.7717/peerj.12684 PubMed 35036158

December 22, 2021

Transcriptome analysis of transgenic apple fruit overexpressing microRNA172 reveals candidate transcription factors regulating apple fruit development at early stages

Zhe Zhou, Yanmin Zhu, Hengtao Zhang, Ruiping Zhang, Qiming Gao, Tiyu Ding, Huan Wang, Zhenli Yan, Jia-Long Yao

https://doi.org/10.7717/peerj.12675 PubMed 35036153

November 9, 2021

Transcriptome-based analysis of the hormone regulation mechanism of gender differentiation in Juglans mandshurica Maxim

Baiting Qin, Xiujun Lu, Xiaomei Sun, Jianguo Cui, Jifeng Deng, Lijie Zhang

https://doi.org/10.7717/peerj.12328 PubMed 34820167

November 9, 2021

Development of a bioinformatics platform for analysis of quantitative transcriptomics and proteomics data: the OMnalysis

Punit Tyagi, Mangesh Bhide

https://doi.org/10.7717/peerj.12415 PubMed 34820180

October 20, 2021

Comparative transcriptome analyses of different Salvia miltiorrhiza varieties during the accumulation of tanshinones

Jingwen Zhou, Rui Liu, Min Shuai, Zhu-Yun Yan, Xin Chen

https://doi.org/10.7717/peerj.12300 PubMed 34721983

October 18, 2021

Differential transcriptome analysis and identification of genes related to resistance to blight in three varieties of Bambusa pervariabilis × Dendrocalamopsis grandis

Fengying Luo, Xinmei Fang, Han Liu, Tianhui Zhu, Shan Han, Qi Peng, Shujiang Li

https://doi.org/10.7717/peerj.12301 PubMed 34721984

July 21, 2021

Co-expression network and comparative transcriptome analysis for fiber initiation and elongation reveal genetic differences in two lines from upland cotton CCRI70 RIL population

Xiao Jiang, Liqiang Fan, Pengtao Li, Xianyan Zou, Zhen Zhang, Senmiao Fan, Juwu Gong, Youlu Yuan, Haihong Shang

https://doi.org/10.7717/peerj.11812 PubMed 34327061