July 2014

Table of Contents - PeerJ (Biology Articles)

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DCP: a new method for the prediction of antibody CDR conformation from sequence

Preparatory steps for DCP

July 1, 2014

DCP: a new method for the prediction of antibody CDR conformation from sequence

Accurate prediction of the conformation of Complementarity-Determining Regions (CDRs) is important in modelling antibodies for protein engineering applications. A new method termed Disjoint Combinations Profiling (DCP) is presented, representing a considerable advance in the prediction of CDR conformations -

- read article

July 17, 2014
Automatic large-scale classification of bird sounds is strongly improved by unsupervised feature learning
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https://doi.org/10.7717/peerj.488 PubMed 25083350
July 22, 2014
The bacterial communities of Drosophila suzukii collected from undamaged cherries
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https://doi.org/10.7717/peerj.474 PubMed 25101226
July 22, 2014
Eleutherodactylus frogs show frequency but no temporal partitioning: implications for the acoustic niche hypothesis
https://doi.org/10.7717/peerj.496 PubMed 25101228
July 3, 2014
Anatomical and biomechanical traits of broiler chickens across ontogeny. Part I. Anatomy of the musculoskeletal respiratory apparatus and changes in organ size
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https://doi.org/10.7717/peerj.432 PubMed 25071981
July 8, 2014
Local domestication of lactic acid bacteria via cassava beer fermentation
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https://doi.org/10.7717/peerj.479 PubMed 25071997
July 3, 2014
Anatomical and biomechanical traits of broiler chickens across ontogeny. Part II. Body segment inertial properties and muscle architecture of the pelvic limb
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https://doi.org/10.7717/peerj.473 PubMed 25071996
July 29, 2014
Prevalence of Entamoeba species in captive primates in zoological gardens in the UK
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https://doi.org/10.7717/peerj.492 PubMed 25097822
July 31, 2014
Mechanical properties of the cuticles of three cockroach species that differ in their wind-evoked escape behavior
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https://doi.org/10.7717/peerj.501 PubMed 25101230
July 3, 2014
The first juvenile specimens of Plateosaurus engelhardti from Frick, Switzerland: isolated neural arches and their implications for developmental plasticity in a basal sauropodomorph
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https://doi.org/10.7717/peerj.458 PubMed 25071987
July 1, 2014
Local norms of cheating and the cultural evolution of crime and punishment: a study of two urban neighborhoods
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https://doi.org/10.7717/peerj.450 PubMed 25071983
July 15, 2014
Resource availability and repeated defoliation mediate compensatory growth in trembling aspen (Populus tremuloides) seedlings
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https://doi.org/10.7717/peerj.491 PubMed 25083352
July 15, 2014
Applying the cost of generating force hypothesis to uphill running
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https://doi.org/10.7717/peerj.482 PubMed 25083347
July 1, 2014
Measurement uncertainties in quantifying aeolian mass flux: evidence from wind tunnel and field site data
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https://doi.org/10.7717/peerj.454 PubMed 25071984
July 15, 2014
Surfactant protein C peptides with salt-bridges (“ion-locks”) promote high surfactant activities by mimicking the α-helix and membrane topography of the native protein
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https://doi.org/10.7717/peerj.485 PubMed 25083348
July 1, 2014
The role of fragmentation and landscape changes in the ecological release of common nest predators in the Neotropics
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https://doi.org/10.7717/peerj.464 PubMed 25071989
July 15, 2014
Prosocial skills may be necessary for better peer functioning in children with symptoms of disruptive behavior disorders
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https://doi.org/10.7717/peerj.487 PubMed 25083349
July 22, 2014
Involvement of cortical midline structures in the processing of autobiographical information
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https://doi.org/10.7717/peerj.481 PubMed 25097820
July 15, 2014
Microhabitat use, population densities, and size distributions of sulfur cave-dwelling Poecilia mexicana
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https://doi.org/10.7717/peerj.490 PubMed 25083351
July 10, 2014
Computational development of rubromycin-based lead compounds for HIV-1 reverse transcriptase inhibition
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https://doi.org/10.7717/peerj.470 PubMed 25071993
July 31, 2014
Curculio Curculis lupus: biology, behavior and morphology of immatures of the cannibal weevil Anchylorhynchus eriospathae G. G. Bondar, 1943
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https://doi.org/10.7717/peerj.502 PubMed 25101231
July 1, 2014
A complete, multi-level conformational clustering of antibody complementarity-determining regions
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https://doi.org/10.7717/peerj.456 PubMed 25071986
July 29, 2014
In vitro transcription accurately predicts lac repressor phenotype in vivo in Escherichia coli
https://doi.org/10.7717/peerj.498 PubMed 25097824
July 8, 2014
Development of allele-specific multiplex PCR to determine the length of poly-T in intron 8 of CFTR
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https://doi.org/10.7717/peerj.468 PubMed 25071991
July 15, 2014
Plant dieback under exceptional drought driven by elevation, not by plant traits, in Big Bend National Park, Texas, USA
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https://doi.org/10.7717/peerj.477 PubMed 25083346
July 1, 2014
Automated analysis of invadopodia dynamics in live cells
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https://doi.org/10.7717/peerj.462 PubMed 25071988
DCP: a new method for the prediction of antibody CDR conformation from sequence

Preparatory steps for DCP

July 1, 2014

DCP: a new method for the prediction of antibody CDR conformation from sequence

Accurate prediction of the conformation of Complementarity-Determining Regions (CDRs) is important in modelling antibodies for protein engineering applications. A new method termed Disjoint Combinations Profiling (DCP) is presented, representing a considerable advance in the prediction of CDR conformations -

- read article

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