Microbiology

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Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota (2018) PeerJ

Konstantinos Kormas –– Sampling and handling of samples is very crucial in -omics based studies and very often the necessary attention is not met in publiched works. Such studies are necessary... Read more

VSEARCH: a versatile open source tool for metagenomics
365 citations · 11,847 views · 2,050 downloads
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
321 citations · 20,724 views · 3,231 downloads
PhyloSift: phylogenetic analysis of genomes and metagenomes
224 citations · 26,922 views · 4,741 downloads
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
194 citations · 17,390 views · 3,438 downloads
Swarm: robust and fast clustering method for amplicon-based studies
166 citations · 12,960 views · 1,851 downloads
Anvi’o: an advanced analysis and visualization platform for ‘omics data
114 citations · 16,986 views · 2,818 downloads
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
110 citations · 17,513 views · 2,493 downloads
VirSorter: mining viral signal from microbial genomic data
104 citations · 13,444 views · 2,219 downloads
GroopM: an automated tool for the recovery of population genomes from related metagenomes
106 citations · 7,333 views · 1,576 downloads
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
74 citations · 9,110 views · 1,742 downloads

Discussing these articles

54 days ago
Compact graphical representation of phylogenetic data and metadata with GraPhlAn https://t.co/l9efgsGQPT @thePeerJ GraPhlAn https://t.co/ejaEaNqs45 tutorial GraPhlAn tutorial *Python-based software

145 days ago
At last! VSEARCH is here https://t.co/LerRP1DBVV via @thePeerJ

#R análisis genético de poblaciones con reproducción clonal, parcialmente clonal y/o sexual https://t.co/nkfOayPmGl #rstatsES #DataScience https://t.co/xU3qpbABaM

410 days ago
Alicia Clum: Check out VirSorter at https://t.co/Ni3fgv2gL6 @doe_jgi #PBUGM

A population genetic R-evolution
http://www.molecularecologist.com/2015/01/a-population-genetic-r-evolution/