Microbiology

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
274 citations · 19,390 views · 2,969 downloads
VSEARCH: a versatile open source tool for metagenomics
224 citations · 9,794 views · 1,735 downloads
PhyloSift: phylogenetic analysis of genomes and metagenomes
196 citations · 25,698 views · 4,593 downloads
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
157 citations · 16,572 views · 3,304 downloads
Swarm: robust and fast clustering method for amplicon-based studies
134 citations · 12,114 views · 1,737 downloads
Anvi’o: an advanced analysis and visualization platform for ‘omics data
91 citations · 15,230 views · 2,473 downloads
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
89 citations · 15,800 views · 2,347 downloads
GroopM: an automated tool for the recovery of population genomes from related metagenomes
97 citations · 6,880 views · 1,507 downloads
VirSorter: mining viral signal from microbial genomic data
79 citations · 11,951 views · 1,985 downloads
Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data
63 citations · 7,504 views · 2,645 downloads

Discussing these articles

At last! VSEARCH is here https://t.co/LerRP1DBVV via @thePeerJ

#R análisis genético de poblaciones con reproducción clonal, parcialmente clonal y/o sexual https://t.co/nkfOayPmGl #rstatsES #DataScience https://t.co/xU3qpbABaM

284 days ago
Alicia Clum: Check out VirSorter at https://t.co/Ni3fgv2gL6 @doe_jgi #PBUGM

A population genetic R-evolution
http://www.molecularecologist.com/2015/01/a-population-genetic-r-evolution/

Interview with the first-named author
http://blog.peerj.com/post/84216635478/research-updates-intestinal-microbiota-and-blood-serum-l