Microbiology

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Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota (2018) PeerJ

Konstantinos Kormas –– Sampling and handling of samples is very crucial in -omics based studies and very often the necessary attention is not met in publiched works. Such studies are necessary... Read more

VSEARCH: a versatile open source tool for metagenomics
417 citations · 12,534 views · 2,191 downloads
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
337 citations · 21,221 views · 3,300 downloads
PhyloSift: phylogenetic analysis of genomes and metagenomes
231 citations · 27,334 views · 4,811 downloads
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
201 citations · 17,667 views · 3,484 downloads
Swarm: robust and fast clustering method for amplicon-based studies
180 citations · 13,271 views · 1,889 downloads
Anvi’o: an advanced analysis and visualization platform for ‘omics data
126 citations · 17,545 views · 2,920 downloads
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
116 citations · 17,982 views · 2,554 downloads
VirSorter: mining viral signal from microbial genomic data
105 citations · 13,924 views · 2,302 downloads
GroopM: an automated tool for the recovery of population genomes from related metagenomes
109 citations · 7,463 views · 1,607 downloads
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
80 citations · 9,315 views · 1,783 downloads

Discussing these articles

@pjacock @torstenseemann Not blast exactly but we found it mattered for usearch when reference contained duplicate/similar sequence s https://t.co/SV7G8C5M7v

103 days ago
Compact graphical representation of phylogenetic data and metadata with GraPhlAn https://t.co/l9efgsGQPT @thePeerJ GraPhlAn https://t.co/ejaEaNqs45 tutorial GraPhlAn tutorial *Python-based software

194 days ago
At last! VSEARCH is here https://t.co/LerRP1DBVV via @thePeerJ

#R análisis genético de poblaciones con reproducción clonal, parcialmente clonal y/o sexual https://t.co/nkfOayPmGl #rstatsES #DataScience https://t.co/xU3qpbABaM

459 days ago
Alicia Clum: Check out VirSorter at https://t.co/Ni3fgv2gL6 @doe_jgi #PBUGM

A population genetic R-evolution
http://www.molecularecologist.com/2015/01/a-population-genetic-r-evolution/