Microbiology

Article commentary

Editors can now comment on articles published in PeerJ and elsewhere.

Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota (2018) PeerJ

Konstantinos Kormas –– Sampling and handling of samples is very crucial in -omics based studies and very often the necessary attention is not met in publiched works. Such studies are necessary... Read more

Analysis of adult damselfly fecal material aids in the estimation of antibiotic-resistant Enterobacterales contamination of the local environment

Section Editor rating: 8 / 10

Siouxsie Wiles –– This is a really neat study, looking at antibiotic-resistant bacteria in damselfly poo as a potential means of identifying what resistant-bacteria are present in the wider environment. I would love to see them extend the study to look at genomic analyses rather than being limited to what they could grow on selective agar.
Agrichemicals and antibiotics in combination increase antibiotic resistance evolution

Section Editor rating: 6 / 10

Valeria Souza –– It is very important to understand that increase stresses over bacteria increase the probability of SOS repair response and increase levels of HGT, hence resistance.
Production of exopolysaccharide by strains of Lactobacillus plantarum YO175 and OF101 isolated from traditional fermented cereal beverage

Editor rating: 7 / 10

Carlos Conte-Junior –– This article is relevant to food science and technology.
Functions of Candida albicans cell wall glycosidases Dfg5p and Dcw1p in biofilm formation and HOG MAPK pathway

Editor rating: 7 / 10

Jürg Bähler –– Candida biofilm formation is a fascinating biological process and has medical implications.
Cellular production of a counterfeit viral protein confers immunity to infection by a related virus

Editor rating: 7 / 10

Kate Bishop –– The acquisition of viral genes by hosts to use as anti-viral proteins is interesting and this adds to our knowledge of such mechanisms.
Maxent estimation of aquatic Escherichia coli stream impairment

Editor rating: 6 / 10

Timothy Scheibe –– This paper will introduce those interested in water quality issues to a specific machine-learning approach to modeling species niches and biodiversity (Maxent), and as such could appeal to a cross-disciplinary audience. I did not give a higher rating as the paper advances the field of water quality fecal indicators only incrementally as a proof-of-principle.
Molecular typing and profiling of topoisomerase mutations causing resistance to ciprofloxacin and levofloxacin in Elizabethkingia species

Editor rating: 7 / 10

Paul Tulkens –– Although Elizabethkingia may seem as a rather rare organism in terms fo human pathology, the study illustrates well the various mechanisms of resistance to a important fluoroquinolone and will be of interest to many investigators of antibacterial resistance and to clinicians using ciprofloxacin or other fluoroquinolones.
Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data

Section Editor rating: 6 / 10

Valeria Souza –– The fine details of the differences between these two lineages have been a source of discussion for a long time, this study seems to resolve the problem in a very nice way.
A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

Editor rating: 8 / 10

Konstantinos Kormas –– A very good effort on putting together and analysing shrimp gut microbiota.
The effects of fermentation products of prebiotic fibres on gut barrier and immune functions in vitro

Editor rating: 7 / 10

Maria Cristina Albertini –– I believe that prebiotics may have an important influence of immune response. More information are needed on intestinal barrier functions and this paper can be of support.

Discussing these articles

Analysis of adult damselfly fecal material aids in the estimation of antibiotic-resistant Enterobacterales contamination of the local environment https://t.co/7YN0CCSZzC @thePeerJ https://t.co/9CGpFizzZu

Agrichemicals and antibiotic in combination increase antibiotic resistance https://t.co/JwI7MGChji via @thePeerJ

Functions of Candida albicans cell wall glycosidases Dfg5p and Dcw1p in biofilm formation and HOG MAPK pathway https://t.co/mWItXMLdTM @thePeerJ https://t.co/9drzdViZnU

Maxent estimation of aquatic Escherichia coli stream impairment https://t.co/VYLZr5x4Jp @thePeerJ https://t.co/1PddzSUv2B

New paper by @rpetit3 with @jose_sandeep @jamesmhogan @mezewudo Bacillus anthracis identification in shotgun metagenome data using k-mers. taking into account lethal toxin gene presence and false positives from close relatives https://t.co/M6huJiFUxP via @thePeerJ

The effects of fermentation products of prebiotic fibres on gut barrier and im... - Pham VT et al. - https://t.co/oMFfnOPFG0 #microbiome

A meta-analysis reveals the environmental and #host factors shaping the structure and function of the #shrimp #microbiota https://t.co/il8mxlFwsa via @thePeerJ