Ecology

Using observation-level random effects to model overdispersion in count data in ecology and evolution
213 citations · 13,718 views · 3,476 downloads
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
167 citations · 17,015 views · 3,368 downloads
Swarm: robust and fast clustering method for amplicon-based studies
146 citations · 12,588 views · 1,792 downloads
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
63 citations · 8,847 views · 1,686 downloads
Automatic large-scale classification of bird sounds is strongly improved by unsupervised feature learning
69 citations · 15,922 views · 2,305 downloads
Humans differ in their personal microbial cloud
60 citations · 47,233 views · 5,152 downloads
Gooseneck barnacles (Lepas spp.) ingest microplastic debris in the North Pacific Subtropical Gyre
60 citations · 9,492 views · 1,613 downloads
Assessing insect responses to climate change: What are we testing for? Where should we be heading?
53 citations · 20,965 views · 2,227 downloads
A comparison of observation-level random effect and Beta-Binomial models for modelling overdispersion in Binomial data in ecology & evolution
41 citations · 4,955 views · 1,120 downloads
Continent-wide survey reveals massive decline in African savannah elephants
41 citations · 32,814 views · 3,744 downloads

Discussing these articles

@larcilah @HideInamine @TigrerosNatasha @slaubrie @kdhecology @bolkerb Sounds good! Looks like implementation is easy (just add another random effect and use poisson family), and here's a recent paper talking about the usefulness and limitations of this approach: https://t.co/VK1OBRdflw

Automatic large-scale classification of bird sounds is strongly improved by unsupervised feature learning https://t.co/IFJkE4qiAY - probably the way to go for #bioacoustic #monitoring

Observation Level Random Effects in Overdipsersed Binomial Mixed Models https://t.co/K8ZfBPtcoW via @thePeerJ

@ejame16 Not completely environmental, but this one had a high wow factor: tpersonal microbial cloud. PeerJ3:e1258 https://t.co/07alItIqpp

African Elephant (Loxodonta africana) Populations Crash! Article: https://t.co/CJisTzWtuT Journal: https://t.co/JMJdQ1Ou4P

CNN: 'Our living dinosaurs' There are far fewer African elephants than we thought, study shows
http://www.cnn.com/2016/08/31/africa/great-elephant-census/

The Smithsonian: "You Produce a Microbial Cloud That Can Act Like an Invisible Fingerprint"
http://www.smithsonianmag.com/science-nature/you-produce-microbial-cloud-can-act-invisible-fingerprint-180956698/

Software can decode bird songs
http://www.bbc.co.uk/news/science-environment-28358123

Interview with the first-named author
http://blog.peerj.com/post/82202736791/research-update-insects-and-climate-change

An ecosystem of our own making could pose a threat
http://www.latimes.com/science/la-sci-plastisphere-20131228,0,811701.story#axzz2pIyvBcjH