Bioinformatics and Genomics

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
260 citations · 19,046 views · 2,906 downloads
scikit-image: image processing in Python
238 citations · 57,887 views · 10,759 downloads
VSEARCH: a versatile open source tool for metagenomics
202 citations · 9,144 views · 1,671 downloads
PhyloSift: phylogenetic analysis of genomes and metagenomes
192 citations · 25,419 views · 4,556 downloads
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
152 citations · 16,420 views · 3,266 downloads
Swarm: robust and fast clustering method for amplicon-based studies
130 citations · 11,972 views · 1,716 downloads
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
125 citations · 16,868 views · 2,731 downloads
Data reuse and the open data citation advantage
113 citations · 30,833 views · 2,908 downloads
System wide analyses have underestimated protein abundances and the importance of transcription in mammals
92 citations · 9,567 views · 2,080 downloads
Anvi’o: an advanced analysis and visualization platform for ‘omics data
88 citations · 14,935 views · 2,421 downloads

Discussing these articles

scikit-image: image processing in Python https://t.co/FAreTqwW6a via @thePeerJ

#R análisis genético de poblaciones con reproducción clonal, parcialmente clonal y/o sexual https://t.co/nkfOayPmGl #rstatsES #DataScience https://t.co/xU3qpbABaM

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities [PeerJ] https://t.co/ItshY8nGsS

406 days ago
@LHuntNeuro Something like: https://t.co/VdhAWlQggj ? Library / OA folk like @McDawg or @torstenreimer may know more on citation benefit of #OpenData

A population genetic R-evolution
http://www.molecularecologist.com/2015/01/a-population-genetic-r-evolution/

Protein Abundances Mostly Due to Transcription, not Translation
http://www.genengnews.com/gen-news-highlights/protein-abundances-mostly-due-to-transcription-not-translation/81249558/

Scientists must share early and share often to boost citations
http://theconversation.com/scientists-must-share-early-and-share-often-to-boost-citations-18699