Bioinformatics and Genomics

Editors' Picks

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
249 citations · 8,273 views · 1,482 downloads
kuenm: an R package for detailed development of ecological niche models using Maxent
99 citations · 12,026 views · 2,502 downloads
Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences
86 citations · 10,936 views · 2,593 downloads
Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
99 citations · 9,199 views · 1,956 downloads
D-GENIES: dot plot large genomes in an interactive, efficient and simple way
112 citations · 7,371 views · 1,038 downloads
Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data
75 citations · 8,733 views · 1,002 downloads
GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data
61 citations · 6,929 views · 1,523 downloads
Estimating intraspecific genetic diversity from community DNA metabarcoding data
68 citations · 5,765 views · 1,413 downloads
Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)
59 citations · 5,740 views · 1,026 downloads
Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics
47 citations · 8,662 views · 2,275 downloads
Bioinformatics and Genomics

Section discussions

Ren et al. identify diagnostic #genes and vital #microRNAs involved in rheumatoid arthritis based on data mining and experimental verification Read the @PeerJLife article #Bioinformatics #DataMining #MachineLearning

Adi Alhudhaif presents a novel multi-class imbalanced #EEG signals classification based on the adaptive synthetic sampling approach Read the full @PeerJCompSci article #Bioinformatics #DataMining #MachineLearning

Just published in @PeerJLife - EGFR mutation status yield from bronchoalveolar lavage in patients with primary pulmonary adenocarcinoma compared to a venous blood sample and tissue biopsy Read the full article #Genetics #Oncology #RespiratoryMedicine

DNA barcoding of Austrian snow #scorpionflies reveals potential cryptic diversity in Boreus westwoodi. Research from Zangl et al. @UniGraz @NHM_Wien Read the full @PeerJLife #Biodiversity #Entomology #Genetics #DNAbarcoding

Identification of Vitamin D-related gene signature to predict colorectal cancer prognosis Read the full @PeerJLife article #Bioinformatics #Gastroenterology #Hepatology #Nutrition #Oncology

Identification of the biological function of miR-9 in spinal cord ischemia-reperfusion injury in rats Read the full @PeerJLife article #Bioinformatics #Genomics #MolecularBiology #Neuroscience

Response of Escherichia coli minimal ter operon to UVC and auto-aggregation: pilot study @thePeerJ