Bioinformatics and Genomics

Article commentary

Osmolyte regulation by TonEBP/NFAT5 during anoxia-recovery and dehydration–rehydration stresses in the freeze-tolerant wood frog (Rana sylvatica)

Editor rating: 8 / 10

Dunxian Tan –– This observation provides novel information in the field of ischemia/reperfusion protection
Resources available for autism research in the big data era: a systematic review

Editor rating: 7 / 10

Jon Brock –– Autism research is increasingly moving towards a "big data" approach. This review of the available databases will be an invaluable resource for researchers in the field.
Optimizing the use of a sensor resource for opponent polarization coding

Editor rating: 9 / 10

Mario Negrello –– This article contains an insighful and thorough analysis of the physical constraints for encoding and the processing of information in polarized vision, and more specifically, in polarization opponency. This article is exemplary for the field of neural coding in that it covers multiple angles in the analysis with solid logics and deep appreciation for the biological phenomenon under study.
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons

Editor rating: 8 / 10

Blanca Landa –– The new pipeline will be a valuable tool for people woorking in NGS of 16S amplicons
Hydrogel scaffolds promote neural gene expression and structural reorganization in human astrocyte cultures

Editor rating: 7 / 10

Luciano Fadiga –– technically sound, it addresses a relevant topic
Comprehensive transcriptome analysis provides new insights into nutritional strategies and phylogenetic relationships of chrysophytes

Editor rating: 7 / 10

Konstantinos Kormas –– A very insightful piece of work for the ecophysiology of chrysophytes.
Impacts of land-use management on ecosystem services and biodiversity: an agent-based modelling approach

Editor rating: 7 / 10

Jack Stanford –– The paper describes an agent based model that novelly integrates land use impacts in northern Alberta in ways that will be useful elsewhere.
Seqenv: linking sequences to environments through text mining

Editor rating: 8 / 10

Timothy Read –– Metagenomics is set to become a major cross-disciplinary field. The article brings in a new source of metadata to help understand microbial ecology.
Malagasy Conostigmus (Hymenoptera: Ceraphronoidea) and the secret of scutes

Editor rating: 9 / 10

Ilaria Negri –– A new methodology applied for taxonomic studies
Identifying suitable reference genes for gene expression analysis in developing skeletal muscle in pigs

Editor rating: 8 / 10

Cong-Jun Li –– The selection of suitable reference genes is crucial to accurately evaluate and normalize the relative expression level of target genes for gene function analysis. This manuscript provides some important information about the references genes for pigs, one is of important economic value.

Discussing these articles

326 days ago
Our 'Impacts of land-use management on ecosystem services and biodiversity: an agent-based modelling approach' article was published 1 year ago today in #OpenAccess journal @thePeerJ https://t.co/MryDq1WMHZ #