Preprints (not yet peer-reviewed)

1 download
14 views

Nowadays, the daily work of many research communities is characterized by an increasing amount and complexity of data. This makes it increasingly difficult to manage, access and utilize to ultimately gain scientific insights based on it. At the same time, domain...

["Data Science","Distributed and Parallel Computing"]
doi:10.7287/peerj.preprints.2831v1
187 downloads
330 views

Software energy consumption is a performance related non-functional requirement that complicates building software on mobile devices today. Energy hogging applications are a liability to both the end-user and software developer. Measuring software energy consumption...

["Data Mining and Machine Learning","Mobile and Ubiquitous Computing","Software Engineering"]
doi:10.7287/peerj.preprints.2419v3
24 downloads
131 views

MerCat (“ Mer - Cat enate”) is a parallel, highly scalable and modular property software package for robust analysis of features in next-generation sequencing data. Using assembled contigs and raw sequence reads from any platform as input, MerCat performs k-mer...

["Bioinformatics","Computational Biology","Data Science","Scientific Computing and Simulation","Software Engineering"]
doi:10.7287/peerj.preprints.2825v1
1 download
33 views

Introduction Computational reproducibility refers to the possibility of reconstructing all the steps of a workflow that connects raw data, processed data and results: it is a fundamental issue in the omic studies because of the complex and high-dimensional nature...

["Bioinformatics","Computational Biology","Data Science"]
doi:10.7287/peerj.preprints.2823v1
2 downloads
17 views

The HUBzero platform is an infrastructure enabling online scientific communities to collaborate and share information and computational resources as they explore scientific phenomena. HUBzero has been adopted by the Regenstrief Center for Healthcare Engineering...

["Data Science","Visual Analytics"]
doi:10.7287/peerj.preprints.2819v1
1 download
12 views

This paper presents the latest developments on the VIALACTEA Science Gateway in the context of the FP7 VIALACTEA project. This Science Gateway operates as a central workbench for the VIALACTEA community in order to allow astronomers to process the new-generation...

["Algorithms and Analysis of Algorithms","Distributed and Parallel Computing","Visual Analytics"]
doi:10.7287/peerj.preprints.2818v1
1 download
9 views

The Cherenkov Telescope Array (CTA) is an initiative to build the next generation, ground-based gamma-ray observatories. We present a prototype workspace developed at INAF that aims at providing innovative solutions for the CTA community. The workspace leverages...

["Algorithms and Analysis of Algorithms","Distributed and Parallel Computing"]
doi:10.7287/peerj.preprints.2817v1
18 downloads
132 views

Since 2004 the term “Web 2.0” has generated a revolution on the World Wide Web and it has developed new ideas, services, application to improve and facilitate communications through the web. Technologies associated with the second-generation of the World Wide Web...

["World Wide Web and Web Science"]
doi:10.7287/peerj.preprints.2811v1
53 downloads
125 views

With the ultra-scaling of CMOS technology, high-speed and low-power millimeter-wave communication systems for network-on-chip have been attracting more and more attentions due to the wider bandwidth and higher data rate that can meet the ever-increasing needs for...

["Emerging Technologies"]
doi:10.7287/peerj.preprints.2694v2
50 downloads
494 views

The nonparametric minimum hypergeometric (mHG) test is a popular alternative to Kolmogorov-Smirnov (KS)-type tests for determining gene set enrichment. However, these approaches have not been compared to each other in a quantitative manner. Here, I first perform...

["Computational Biology","Algorithms and Analysis of Algorithms","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.1962v3
44 downloads
93 views

Modern soft X-ray observatories can yield unique insights into time domain astrophysics, and a huge amount of information is stored - and largely unexploited - in data archives. Like a treasure-hunt, the EXTraS project is harvesting the hitherto unexplored temporal...

["Distributed and Parallel Computing","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.2519v2
33 downloads
58 views

CodonGenie, freely available from http://codon.synbiochem.co.uk, is a simple web application for designing ambiguous codons to support protein mutagenesis applications. Ambiguous codons are derived from specific heterogeneous nucleotide mixtures, which create sequence...

["Bioengineering","Bioinformatics","Biotechnology","Computational Biology","Synthetic Biology"]
doi:10.7287/peerj.preprints.2797v1
15 downloads
24 views

Recognition of human emotions from the imaging templates is useful in a wide variety of human-computer interaction and intelligent systems applications. However, the automatic recognition of facial expressions using image template matching techniques suffer from...

["Human-Computer Interaction","Algorithms and Analysis of Algorithms","Artificial Intelligence","Computer Vision","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.2794v1
26 downloads
132 views

Recently, we hear more about web generations and its role in current web technologies we are using. Most of people know Web 2.0 and how the huge transformation changed from the previous version (Web 1.0). Web 2.0 is the style that became standard in the late 1990s...

["Security and Privacy","World Wide Web and Web Science"]
doi:10.7287/peerj.preprints.2793v1
10 downloads
167 views

Motivated by the increasing amount of voices who ask for careful consideration of what context-rich data analysis methods can tell us about the activities of human collectives, we contribute an argumentation that employs a dialectic of literature on the philosophy...

["Data Mining and Machine Learning","Data Science","Network Science and Online Social Networks","Social Computing","World Wide Web and Web Science"]
doi:10.7287/peerj.preprints.2789v1
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