Preprints (not yet peer-reviewed)

55 downloads
109 views

Background. Despite great progress in studies on Wolbachia infection in insects, the knowledge about its relations with beetle species, populations and individuals, and the effects of bacteria on these hosts is still unsatisfactory. In this review we summarize...

["Ecology","Entomology","Evolutionary Studies","Microbiology"]
doi:10.7287/peerj.preprints.3412v1
49 downloads
176 views

Although recent advances in molecular methods have facilitated understanding the evolution of fungal symbiosis, little is known about genomic and microbiome features of most uncultured symbiotic fungal clades. Here, we analysed the genome and microbiome of Inocybaceae...

["Biodiversity","Ecology","Genomics","Microbiology","Mycology"]
doi:10.7287/peerj.preprints.3408v1
35 downloads
175 views

The introduction of antibiotics for both medical and non-medical purposes has had a positive effect in human welfare and agricultural output in the past century. However, there is also an important legacy in the use and disposal of antimicrobial agents in natural...

["Ecology","Microbiology","Health Policy","Public Health","Natural Resource Management"]
doi:10.7287/peerj.preprints.3361v1
36 downloads
114 views

Petriella setifera is poorly-known species with only fragmentary information in literature and with published partial genome about the fungal species. Therefore, the aim of the study was an analysis of the intraspecific genetic and functional diversity of new isolated...

["Agricultural Science","Ecology","Microbiology","Mycology"]
doi:10.7287/peerj.preprints.3353v1
396 downloads
602 views

Pattern recognition is commonly used for identifying an unknown entity from a set of known objects curated in a database, and find use in various applications such as fingerprint matching and microbial identification. Mass spectrometry is increasingly used in identifying...

["Biodiversity","Bioinformatics","Ecology","Microbiology","Science and Medical Education"]
doi:10.7287/peerj.preprints.580v3
53 downloads
114 views

Atmospheric deposition represents a major vector of both macro- and micro-nutrients to the oligotrophic open oceans, potentially imposing a profound impact on the functioning of the microbial community. Whereas responses of the prokaryotes to atmospheric deposition...

["Ecology","Marine Biology","Microbiology","Climate Change Biology"]
doi:10.7287/peerj.preprints.3292v1
38 downloads
148 views

In arable cropping systems, reduced or conservation tillage practices are linked with improved soil quality, C retention and higher microbial biomass, but most long-term studies rarely focus on depths greater than 15 cm nor allow comparison of microbial community...

["Agricultural Science","Ecology","Microbiology","Soil Science"]
doi:10.7287/peerj.preprints.3288v1
38 downloads
143 views

Advances in genomic sequencing technologies resulted in massive microbial diversity data (16S ribosomal gene sequences, rDNA) being generated in every possible environment. However, the majority of microorganisms have never been cultured, and therefore, nor cataloged....

["Biodiversity","Biogeography","Bioinformatics","Ecology","Microbiology"]
doi:10.7287/peerj.preprints.3286v1
8 downloads
123 views

Co-existence of microbes in a community is the de facto state of microbial lifestyle in almost all niches on Earth. Thus, microbes live with other microbial species in close proximity, and evolution has selected for specific methods of communication between microbes...

["Biochemistry","Biodiversity","Cell Biology","Ecology","Microbiology"]
doi:10.7287/peerj.preprints.3239v1
187 downloads
557 views

Arsenic (As), a toxic element, has impacted life since early Earth. Thus, microorganisms have evolved many As resistance and tolerance mechanisms to improve their survival outcomes given As exposure. We isolated As resistant bacteria from Centralia, PA, the site...

["Biodiversity","Ecology","Environmental Sciences","Microbiology","Soil Science"]
doi:10.7287/peerj.preprints.2451v2
146 downloads
672 views

Background. Viral metagenomics (viromics) is increasingly used to obtain uncultivated viral genomes, evaluate community diversity, and assess ecological hypotheses. While viromic experimental methods are relatively mature and widely accepted by the research community,...

["Bioinformatics","Ecology","Genomics","Microbiology"]
doi:10.7287/peerj.preprints.3053v1
1,175 downloads
770 views

Microbes, with their vast metabolic capabilities and great adaptability, occupy almost every conceivable ecological niche on Earth. Thus, could they survive in the oligotrophic (i.e., nutrient poor) deionized (DI) water that we use for experiments? Observations...

["Biochemistry","Biodiversity","Ecology","Environmental Sciences","Microbiology"]
doi:10.7287/peerj.preprints.181v5
148 downloads
173 views

Emerging infectious diseases caused by fungal taxa are increasing and are placing a substantial burden on economies and ecosystems worldwide. Of the emerging fungal diseases, chytridomycosis caused by the fungus Batrachochytrium dendrobatidis (hereafter Bd) is...

["Ecology","Microbiology","Mycology","Computational Science"]
doi:10.7287/peerj.preprints.3017v1
35 downloads
209 views

Antibiotic-resistant bacteria complicate many infections and can be difficult to eradicate from hospitals. The population dynamics and ecology of these organisms in the hospital setting, however, is not well understood. Here, we report extensive strain-based antagonistic...

["Ecology","Microbiology","Infectious Diseases"]
doi:10.7287/peerj.preprints.2973v1
166 downloads
580 views

Much of Earth’s biodiversity is at the mercy of currents and physical turnover. Residence time (τ) is the average time that particles spend in a system and is estimated from the ratio of volume to flow rate. Here, we present a framework for how τ influences biodiversity...

["Biodiversity","Ecology","Ecosystem Science","Microbiology"]
doi:10.7287/peerj.preprints.2727v2
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