Preprints (not yet peer-reviewed)

60 downloads
197 views

Fine-scale evolutionary dynamics can be challenging to tease out when focused on broad brush strokes of whole populations over long time spans. We propose a suite of diagnostic metrics that operate on lineages and phylogenies in digital evolution experiments with...

["Computational Biology","Adaptive and Self-Organizing Systems","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.26883v1
69 downloads
244 views

Background. Over the last few decades, in developing nations including India, there have been rapid developments in information and communication technologies with progress towards sustainable development goals facilitating universal access to education. With the...

["Emerging Technologies","Scientific Computing and Simulation","World Wide Web and Web Science","Software Engineering"]
doi:10.7287/peerj.preprints.26715v1
153 downloads
352 views

Most of today’s scientific research relies on computers and software not only for administrational tasks, but also for processing scientific information. Examples of such computer-aided research are the analysis of experimental data or the simulation of phenomena...

["Human-Computer Interaction","Digital Libraries","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.26633v1
75 downloads
203 views

Being able to quantify the similarity between two protein complexes is essential for numerous applications. Prominent examples are database searches for known complexes with a given query complex, comparison of the output of different protein complex prediction...

["Bioinformatics","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.26612v1
91 downloads
296 views

The surgical skills required to successfully maintain hemostasis, the control of operative blood, requires considerable deliberate practice. Hemostasis requires the deft orchestration of bi-dexterous tool manipulation. We present our approach to computationally...

["Human-Computer Interaction","Graphics","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.3334v2
97 downloads
211 views

Configuration files are widely used by scientists and researchers to configure the parameters and initial settings for their computer programs. We present here a Python package that adds physical quantities to these parameters and validate them against user defined...

["Scientific Computing and Simulation","Programming Languages","Software Engineering"]
doi:10.7287/peerj.preprints.3418v1
132 downloads
250 views

We present a linear time-varying Luenberger observer (LTVLO) using compartmental models to estimate the unmeasurable states in patients with type 1 diabetes. The LTVLO proposed is based on the linearization in an operation point of the virtual patient (VP), where...

["Algorithms and Analysis of Algorithms","Scientific Computing and Simulation","Theory and Formal Methods"]
doi:10.7287/peerj.preprints.3341v1
351 downloads
744 views

Landscape genetics combines population genetics, landscape ecology, and spatial analysis to identify landscape and genetic factors that influence genetic and genomic variation. Progress in the field depends on a strong conceptual foundation and the means of identifying...

["Computational Biology","Scientific Computing and Simulation","Spatial and Geographic Information Systems"]
doi:10.7287/peerj.preprints.2225v5
174 downloads
259 views

Background. Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease primarily affecting upper and lower motor neurons in the brain and spinal cord. The heterogeneity in the course of ALS clinical progression and ultimately survival, coupled...

["Bioinformatics","Computational Biology","Data Mining and Machine Learning","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.3262v1
25 downloads
114 views

Irreducible Polynomials (IPs) have been of utmost importance in generation of substitution boxes in modern cryptographic ciphers. In this paper an algorithm entitled Composite Algorithm using both multiplication and division over Galois fields have been demonstrated...

["Cryptography","Scientific Computing and Simulation","Security and Privacy"]
doi:10.7287/peerj.preprints.3259v1
98 downloads
724 views

The geology and mineralogy of the Apollo 12 landing site has been the subject of recent studies that this research attempts to complement from a remote sensing point of view using the Moon Mineralogy Mapper (M3) sensor data, onboard the Chandrayaan-1 lunar orbiter....

["Algorithms and Analysis of Algorithms","Data Science","Scientific Computing and Simulation","Spatial and Geographic Information Systems"]
doi:10.7287/peerj.preprints.2124v2
2,833 downloads
4,067 views

Data wrangling is a critical foundation of data science, and wrangling of categorical data is an important component of this process. However, categorical data can introduce unique issues in data wrangling, particularly in real-world settings with collaborators...

["Computer Education","Data Science","Scientific Computing and Simulation","Social Computing"]
doi:10.7287/peerj.preprints.3163v2
969 downloads
2,294 views

Many current and future data scientists will be "isolated"---working alone or in small teams within a larger organization. This isolation brings certain challenges as well as freedoms. Drawing on my considerable experience both working in the professional sports...

["Computer Education","Data Science","Scientific Computing and Simulation","Social Computing"]
doi:10.7287/peerj.preprints.3160v2
2,687 downloads
5,067 views

The familiar mathematical topics of introductory statistics --- means, proportions, t-tests, normal and t distributions, chi-squared, etc. --- are a product of the first half of the 20th century. Naturally, they reflect the statistical conditions of that era: scarce,...

["Data Science","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.3205v1
5,042 downloads
9,762 views

Data analysis, statistical research, and teaching statistics have at least one thing in common: these activities all produce many files! There are data files, source code, figures, tables, prepared reports, and much more. Most of these files evolve over the course...

["Computer Education","Data Science","Scientific Computing and Simulation","Software Engineering"]
doi:10.7287/peerj.preprints.3159v2
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