Preprints (not yet peer-reviewed)

84 downloads
99 views

Building more open-ended evolutionary systems can simultaneously advance our understanding of biology, artificial life, and evolutionary computation. In order to do so, however, we need a way to determine when we are moving closer to this goal. We propose a set...

["Computational Biology","Adaptive and Self-Organizing Systems","Agents and Multi-Agent Systems","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.27249v3
18 downloads
36 views

Open source projects may face a forking situation at some point during their life-cycle. The traditional view is that forks are a waste of project resources and should be avoided. However, in a wider technological and organisational context, forks can be a way...

["Scientific Computing and Simulation","Software Engineering"]
doi:10.7287/peerj.preprints.27159v1
63 downloads
101 views

This paper addresses two questions related to reproducibility within the context of research related to computer science. First, requirements on reproducibility are analyzed based on a survey addressed to researchers in the academic and private sector. The survey...

["Data Science","Scientific Computing and Simulation","Software Engineering"]
doi:10.7287/peerj.preprints.27082v1
95 downloads
260 views

Fine-scale evolutionary dynamics can be challenging to tease out when focused on broad brush strokes of whole populations over long time spans. We propose a suite of diagnostic metrics that operate on lineages and phylogenies in digital evolution experiments with...

["Computational Biology","Adaptive and Self-Organizing Systems","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.26883v1
211 downloads
319 views

Background. Over the last few decades, in developing nations including India, there have been rapid developments in information and communication technologies with progress towards sustainable development goals facilitating universal access to education. With the...

["Emerging Technologies","Scientific Computing and Simulation","World Wide Web and Web Science","Software Engineering"]
doi:10.7287/peerj.preprints.26715v1
211 downloads
434 views

Most of today’s scientific research relies on computers and software not only for administrational tasks, but also for processing scientific information. Examples of such computer-aided research are the analysis of experimental data or the simulation of phenomena...

["Human-Computer Interaction","Digital Libraries","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.26633v1
131 downloads
261 views

Being able to quantify the similarity between two protein complexes is essential for numerous applications. Prominent examples are database searches for known complexes with a given query complex, comparison of the output of different protein complex prediction...

["Bioinformatics","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.26612v1
135 downloads
340 views

The surgical skills required to successfully maintain hemostasis, the control of operative blood, requires considerable deliberate practice. Hemostasis requires the deft orchestration of bi-dexterous tool manipulation. We present our approach to computationally...

["Human-Computer Interaction","Graphics","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.3334v2
140 downloads
239 views

Configuration files are widely used by scientists and researchers to configure the parameters and initial settings for their computer programs. We present here a Python package that adds physical quantities to these parameters and validate them against user defined...

["Scientific Computing and Simulation","Programming Languages","Software Engineering"]
doi:10.7287/peerj.preprints.3418v1
185 downloads
267 views

We present a linear time-varying Luenberger observer (LTVLO) using compartmental models to estimate the unmeasurable states in patients with type 1 diabetes. The LTVLO proposed is based on the linearization in an operation point of the virtual patient (VP), where...

["Algorithms and Analysis of Algorithms","Scientific Computing and Simulation","Theory and Formal Methods"]
doi:10.7287/peerj.preprints.3341v1
390 downloads
822 views

Landscape genetics combines population genetics, landscape ecology, and spatial analysis to identify landscape and genetic factors that influence genetic and genomic variation. Progress in the field depends on a strong conceptual foundation and the means of identifying...

["Computational Biology","Scientific Computing and Simulation","Spatial and Geographic Information Systems"]
doi:10.7287/peerj.preprints.2225v5
254 downloads
309 views

Background. Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease primarily affecting upper and lower motor neurons in the brain and spinal cord. The heterogeneity in the course of ALS clinical progression and ultimately survival, coupled...

["Bioinformatics","Computational Biology","Data Mining and Machine Learning","Scientific Computing and Simulation"]
doi:10.7287/peerj.preprints.3262v1
29 downloads
122 views

Irreducible Polynomials (IPs) have been of utmost importance in generation of substitution boxes in modern cryptographic ciphers. In this paper an algorithm entitled Composite Algorithm using both multiplication and division over Galois fields have been demonstrated...

["Cryptography","Scientific Computing and Simulation","Security and Privacy"]
doi:10.7287/peerj.preprints.3259v1
119 downloads
765 views

The geology and mineralogy of the Apollo 12 landing site has been the subject of recent studies that this research attempts to complement from a remote sensing point of view using the Moon Mineralogy Mapper (M3) sensor data, onboard the Chandrayaan-1 lunar orbiter....

["Algorithms and Analysis of Algorithms","Data Science","Scientific Computing and Simulation","Spatial and Geographic Information Systems"]
doi:10.7287/peerj.preprints.2124v2
5,539 downloads
5,266 views

Data wrangling is a critical foundation of data science, and wrangling of categorical data is an important component of this process. However, categorical data can introduce unique issues in data wrangling, particularly in real-world settings with collaborators...

["Computer Education","Data Science","Scientific Computing and Simulation","Social Computing"]
doi:10.7287/peerj.preprints.3163v2
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