Preprints (not yet peer-reviewed)

88 downloads
237 views

The coccolithophore Emiliania huxleyi forms some of the largest phytoplankton blooms in the ocean. The rapid demise of these blooms has been linked to viral infections. E. huxleyi abundance, distribution, and nutritional status make them an important food source...

["Marine Biology","Microbiology","Virology","Biological Oceanography"]
doi:10.7287/peerj.preprints.26851v1
30 downloads
96 views

Barley yellow dwarf virus-PAV (BYDV-PAV) is one of the major viruses causing a widespread and serious viral disease affecting cereal crops. To gain a better understanding of plant defence mechanisms of BYDV resistance genes ( Bdv2 and Yd2 ) against BYDV-PAV infection,...

["Agricultural Science","Virology"]
doi:10.7287/peerj.preprints.26764v1
56 downloads
220 views

Two recent researches described the spread of East/Central/South African (ECSA) lineage of chikungunya virus (CHIKV) in the Northeastern and Southeastern Brazil (Charlys da Costa et al. 2017, Cunha et al. 2017) . Initial studies in Northern Brazil, as observed...

["Virology","Epidemiology","Infectious Diseases","Public Health","Translational Medicine"]
doi:10.7287/peerj.preprints.26707v1
18 downloads
74 views

Background. Human papillomavirus (HPV) exhibits epithelial and mucosal tropism. HPV type 17 belongs to the Betapapillomavirus genus and molecular cloning experiments have identified two subtypes (17a and 17b) isolated from epidermodysplasia verruciformis (EV)....

["Molecular Biology","Virology"]
doi:10.7287/peerj.preprints.26675v1
93 downloads
165 views

Honey bee colonies suffer from various pathogens, including honey bee viruses. About 24 viruses have been reported so far. However, six of them are considered to cause severe infection which inflicts heavy losses on beekeeping. The aim of this study is to detect...

["Biodiversity","Entomology","Genetics","Virology"]
doi:10.7287/peerj.preprints.26595v1
64 downloads
131 views

Swine are economically important food animals, but highly contagious enteric viruses can affect entire swine herds and contribute significantly to piglet morbidity and mortality. The most frequent viruses associated with pig gastroenteritis have been reported as...

["Molecular Biology","Veterinary Medicine","Virology"]
doi:10.7287/peerj.preprints.3515v1
59 downloads
130 views

Ornithogalum mosaic virus (OrMV) has a wide host range and affects the production of a variety of ornamentals. In this study, the coat protein (CP) gene of OrMVwas used to investigate the molecular mechanisms underlying the evolution of this virus. The 36 OrMV...

["Agricultural Science","Evolutionary Studies","Microbiology","Virology","Population Biology"]
doi:10.7287/peerj.preprints.3463v1
185 downloads
357 views

Currently the National Center of Biotechnology Information (NCBI) assigns individual taxonomy identifiers to each distinct influenza virus isolate submitted to GenBank. To support this practice, individual flu isolates must be manually added to the NCBI taxonomy...

["Bioinformatics","Computational Biology","Taxonomy","Virology","Science Policy"]
doi:10.7287/peerj.preprints.3428v1
64 downloads
170 views

The hemagglutinin subtypes from Influenza A can be divided into distinct lineages. This is important for tracing the evolutionary history of the gene. It allows regional lineages to be identified and studied. The process of lineage identification depends on phylogenetic...

["Bioinformatics","Virology","Computational Science"]
doi:10.7287/peerj.preprints.3396v1
60 downloads
190 views

The Rickettsiales-like prokaryote - Candidatus Xenohaliotis californiensis (Ca. Xc) – has decimated black abalone populations along the Pacific coast of North America. White abalone, – Haliotis sorenseni – are also susceptible and nearly extinct in the wild due...

["Aquaculture, Fisheries and Fish Science","Conservation Biology","Microbiology","Virology","Natural Resource Management"]
doi:10.7287/peerj.preprints.3351v1
98 downloads
430 views

Current research posits that all multicellular organisms live in symbioses with associated microorganisms and form so-called metaorganisms or holobionts. Cnidarian metaorganisms are of specific interest given that stony corals provide the foundation of the globally...

["Bioinformatics","Genomics","Virology","Biosphere Interactions"]
doi:10.7287/peerj.preprints.3343v1
80 downloads
508 views

Background. Enteroviruses are small non-enveloped viruses with (+) ssRNA genome with one open reading frame. Enterovirus protein 3C (or 3CD for some species) binds the replicative element oriL to initiate replication. The replication of enteroviruses features low...

["Evolutionary Studies","Genomics","Virology"]
doi:10.7287/peerj.preprints.3153v2
60 downloads
145 views

Lineage determination is an important part of the analysis of viral sequence data. Previously this has depended on phylogenetic analysis in order to identify distinct clades within the phylogenetic trees. This method is time consuming and dependent on a set of...

["Bioinformatics","Virology"]
doi:10.7287/peerj.preprints.3166v1
43 downloads
236 views

Recently, a novel phenomenon of horizontal gene transfer of helicase-encoding sequence from positive-stranded RNA viruses to LINE transposons in insect genomes was described. TRAS family transposons encoding an ORF2 protein, which comprised all typical functional...

["Entomology","Genomics","Molecular Biology","Virology"]
doi:10.7287/peerj.preprints.3101v1
120 downloads
262 views

Background. The Ebola Virus Disease (EVD) is a highly infectious disease that has claimed over 25,000 cases in the past 50 years. While many past outbreaks of EVD resulted in relatively few incidents, the 2014 outbreak in West Africa was the most deadly occurrence...

["Virology","Epidemiology","Infectious Diseases","Statistics"]
doi:10.7287/peerj.preprints.3021v1
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