Preprints (not yet peer-reviewed)

3 downloads
44 views

Marine microbes experience varying degrees of barometric pressure depending on the depth at which they reside. High barometric pressure can create an extreme environment which favors the survival of barophilic and barotolerant bacteria. This paper aims to quantify...

["Genetics","Marine Biology","Microbiology"]
doi:10.7287/peerj.preprints.2991v1
7 downloads
127 views

An overdominant mutation in the elongation factor 1-alpha (EF1A) gene in the sea star Pisaster ochraceus has shown itself to mediate tolerance to "sea star wasting disease", a pandemic that has significantly reduced sea star populations on the Pacific coast of...

["Biodiversity","Evolutionary Studies","Genetics","Zoology"]
doi:10.7287/peerj.preprints.2990v1
17 downloads
132 views

Background. Oil spills are major environmental disasters. Dispersants help control spills, as they emulsify oil into droplets to speed bioremediation. Although dispersant toxicity is controversial, the genetic consequences and damages of dispersed oil exposure...

["Genetics","Genomics","Marine Biology"]
doi:10.7287/peerj.preprints.2977v1
45 downloads
204 views

With the goal of evaluating genotyping-by-sequencing (GBS) in a species with a complex octoploid genome, GBS was used to survey genome-wide single-nucleotide polymorphisms (SNPs) in three biparental strawberry (Fragaria ×ananassa) populations. GBS sequence data...

["Agricultural Science","Genetics","Genomics","Plant Science"]
doi:10.7287/peerj.preprints.2975v1
10 downloads
104 views

Movement in proteins requires energy. To this end, natural selection has selected phosphate as the principal energy currency in cells. On the other hand, depicting the state of transcription could come in the form of epigenetic markers, which are modifications...

["Biochemistry","Cell Biology","Computational Biology","Genetics","Molecular Biology"]
doi:10.7287/peerj.preprints.2966v1
80 downloads
159 views

Generating heatmaps of genes datasets have been known to be a graphical representation of data where the individual values contained in a matrix are represented as colors. Herein, we describe AFCMHeatMap a shiny web App that integrates quantitative interaction...

["Bioinformatics","Genetics","Genomics","Computational Science"]
doi:10.7287/peerj.preprints.2961v1
39 downloads
149 views

Elevated sea surface temperatures (SSTs) are linked to an increase in the frequency and severity of bleaching events due to temperatures exceeding corals’ upper thermal limits. The temperatures at which a breakdown of the coral-Symbiodinium endosymbiosis (coral...

["Genetics","Marine Biology","Molecular Biology"]
doi:10.7287/peerj.preprints.2949v1
18 downloads
215 views

Background. Adaptation to local habitat conditions may lead to the natural divergence of populations in life-history traits such as body size, time of reproduction, mate signaling or dispersal capacity. Given enough time and strong enough selection pressures, populations...

["Evolutionary Studies","Genetics"]
doi:10.7287/peerj.preprints.2944v1
17 downloads
128 views

Schistosomiasis remains a major parasitic disease, endemic in large parts of South America. Five neotropical species of Biomphalaria have been found to act as intermediate hosts of Schistosoma mansoni in natural populations, while others have been shown to be susceptible...

["Ecology","Genetics","Parasitology"]
doi:10.7287/peerj.preprints.2933v1
19 downloads
257 views

The characteristic ground colour and banding patterns on shells of the land snail Cepaea nemoralis form a classic study system for genetics and adaptation. We use RNAseq analysis to identify candidate genes underlying this polymorphism. We sequenced cDNA from the...

["Evolutionary Studies","Genetics","Genomics"]
doi:10.7287/peerj.preprints.2928v1
53 downloads
168 views

Background. DNA sequences are pivotal for a wide array of research in biology. Large sequence databases, like GenBank, provide an amazing resource to utilize DNA sequences for large scale analyses. However, many sequences on GenBank contain more than one gene or...

["Bioinformatics","Evolutionary Studies","Genetics","Taxonomy"]
doi:10.7287/peerj.preprints.2920v1
20 downloads
307 views

Pedigrees, though straightforward and versatile, lack the ability to tell us information about many individuals. Though numerical systems have been developed, there is currently no system to quantify the probability of a pedigree following certain inheritance systems....

["Bioinformatics","Genetics","Mathematical Biology","Statistics"]
doi:10.7287/peerj.preprints.2871v5
15 downloads
110 views

Chinese fir (Cunninghamia lanceolata (Lamb.) Hook) is an excellent fast-growing timber species and has significant value in the forestry industry. In order to increase the nitrogen and phosphorus absorption and utilization in Chinese fir, shared differentially...

["Agricultural Science","Biotechnology","Genetics","Genomics","Plant Science"]
doi:10.7287/peerj.preprints.2916v1
25 downloads
265 views

Background. The diatom Phaeodactylum tricornutum is a model photosynthetic organism. Functional genomic work in this organism has established a variety of genetic tools including RNA interference (RNAi). RNAi is a post-transcriptional regulatory process that can...

["Biotechnology","Genetics","Marine Biology","Molecular Biology","Synthetic Biology"]
doi:10.7287/peerj.preprints.2907v1
314 downloads
724 views

Crop domestication is an adaptive process that transforms a wild plant into a domesticated species that can reared and maintained for human use. Though there are hundreds of thousands of flowering plant species, only a small fraction has ever been domesticated....

["Biodiversity","Ecology","Evolutionary Studies","Genetics","Plant Science"]
doi:10.7287/peerj.preprints.2902v1
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