Peer-reviewed Articles - Computer sci

57 downloads
339 views

Forested areas are increasing across Europe, driven by both reforestation programs and farmland abandonment. While tree planting remains the standard reforestation strategy, there is increased interest in spontaneous regeneration as a cost-effective method with...

["Computational Biology","Conservation Biology","Ecology","Forestry","Spatial and Geographic Information Science"]
doi:10.7717/peerj.6219
71 downloads
439 views

Ecological communities are composed of a combination of core species that maintain local viable populations and transient species that occur infrequently due to dispersal from surrounding regions. Preliminary work indicates that while core and transient species...

["Computational Biology","Ecology"]
doi:10.7717/peerj.6019
167 downloads
919 views

Secondary contact is the reestablishment of gene flow between sister populations that have diverged. For instance, at the end of the Quaternary glaciations in Europe, secondary contact occurred during the northward expansion of the populations which had found refugia...

["Computational Biology","Ecology","Evolutionary Studies","Population Biology"]
doi:10.7717/peerj.5325
1 citation
287 downloads
547 views

We evaluated allometric relationships in length, diameter, and mass of branches for two variably managed orchard tree species (tart cherry, Prunus cerasus; apple, Malus spp.). The empirically estimated allometric exponents (a) of the orchard trees were described...

["Agricultural Science","Computational Biology","Ecology","Plant Science"]
doi:10.7717/peerj.4949
1 citation
211 downloads
1,031 views

Quantitative analysis of shape and form is critical in many biological disciplines, as context-dependent morphotypes reflect changes in gene expression and physiology, e.g., in comparisons of environment-dependent phenotypes, forward/reverse genetic assays or shape...

["Computational Biology","Ecology","Computational Science"]
doi:10.7717/peerj.4861
2 citations
314 downloads
1,576 views

The pond turtle Emys trinacris is an endangered endemic species of Sicily showing a fragmented distribution throughout the main island. In this study, we applied “Ensemble Niche Modelling”, combining more classical statistical techniques as Generalized Linear Models...

["Computational Biology","Ecology","Zoology","Climate Change Biology","Spatial and Geographic Information Science"]
doi:10.7717/peerj.4969
226 downloads
2,236 views

Clustered regularly interspaced short palindromic repeat (CRISPR) systems are the adaptive immune systems of bacteria and archaea against viral infection. While CRISPRs have been exploited as a tool for genetic engineering, their spacer sequences can also provide...

["Bioinformatics","Computational Biology","Ecology","Genomics","Microbiology"]
doi:10.7717/peerj.3788
1 citation
237 downloads
1,136 views

Colorectal cancer (CRC) is the third commonest malignant tumor. Previous studies have revealed that the composition change of the human gut microbiome, measured by community diversity, is associated with the progression of CRC. However, a further question, whether...

["Computational Biology","Ecology","Microbiology","Computational Science"]
doi:10.7717/peerj.3383
4 citations
515 downloads
1,761 views

D. suzukii is a relatively recent and destructive pest species to the North American soft-skinned fruit industry. Understanding this species’ potential to shift in abundance and range due to changing climate is an important part of an effective mitigation and management...

["Agricultural Science","Computational Biology","Ecology","Environmental Sciences","Mathematical Biology"]
doi:10.7717/peerj.3192
15 citations
846 downloads
3,518 views

Environmental niche modeling (ENM) is commonly used to develop probabilistic maps of species distribution. Among available ENM techniques, MaxEnt has become one of the most popular tools for modeling species distribution, with hundreds of peer-reviewed articles...

["Biogeography","Computational Biology","Conservation Biology","Ecology","Ecosystem Science"]
doi:10.7717/peerj.3093
12 citations
779 downloads
4,025 views

Marker gene sequencing of microbial communities has generated big datasets of microbial relative abundances varying across environmental conditions, sample sites and treatments. These data often come with putative phylogenies, providing unique opportunities to...

["Computational Biology","Ecology","Mathematical Biology","Microbiology","Statistics"]
doi:10.7717/peerj.2969
2 citations
308 downloads
1,466 views

Background Estimates of fishing and natural mortality are important for understanding, and ultimately managing, commercial and recreational fisheries. High reward tags with fixed station acoustic telemetry provides a promising approach to monitoring mortality rates...

["Aquaculture, Fisheries and Fish Science","Computational Biology","Ecology","Statistics"]
doi:10.7717/peerj.2874
2 citations
310 downloads
3,121 views

Solar salterns are excellent model ecosystems for studying virus-microbial interactions because of their low microbial diversity, environmental stability, and high viral density. By using the power of CRISPR spacers to link viruses to their prokaryotic hosts, we...

["Bioinformatics","Computational Biology","Ecology","Genomics","Microbiology"]
doi:10.7717/peerj.2844
19 citations
822 downloads
2,737 views

A number of different models have been proposed as descriptions of the species-abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical...

["Computational Biology","Ecology","Statistics"]
doi:10.7717/peerj.2823
1 citation
489 downloads
1,993 views

Microbes growing in animal host environments face fluctuations that have elements of both randomness and predictability. In the mammalian gut, fluctuations in nutrient levels and other physiological parameters are structured by the host’s behavior, diet, health...

["Computational Biology","Ecology","Mathematical Biology","Microbiology","Synthetic Biology"]
doi:10.7717/peerj.2716

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