Peer-reviewed Articles - Biology

1 citation
66 downloads
401 views

Historical GIS involves applying GIS to historical research. Using a unique method, I recovered historical tree survey information stored in bar chart figures of a 1956 publication. I converted PDF files to TIF files, which is a format for a GIS layer. I then employed...

["Biogeography","Bioinformatics","Data Science","Spatial and Geographic Information Science"]
doi:10.7717/peerj.5158
2 citations
484 downloads
2,526 views

Background DNA metabarcoding is used to generate species composition data for entire communities. However, sequencing errors in high-throughput sequencing instruments are fairly common, usually requiring reads to be clustered into operational taxonomic units (OTUs),...

["Biogeography","Bioinformatics","Molecular Biology","Freshwater Biology"]
doi:10.7717/peerj.4644
6 citations
398 downloads
1,869 views

SDMtoolbox 2.0 is a software package for spatial studies of ecology, evolution, and genetics. The release of SDMtoolbox 2.0 allows researchers to use the most current ArcGIS software and MaxEnt software, and reduces the amount of time that would be spent developing...

["Biodiversity","Biogeography","Bioinformatics","Conservation Biology"]
doi:10.7717/peerj.4095
1 citation
335 downloads
1,664 views

Microorganisms that reside on and in mammals, such as bats, have the potential to influence their host’s health and to provide defenses against invading pathogens. However, we have little understanding of the skin and fur bacterial microbiota on bats, or factors...

["Biogeography","Bioinformatics","Ecology","Microbiology"]
doi:10.7717/peerj.3944
1 citation
165 downloads
974 views

Understanding how the environment selects a given taxon and the diversity patterns that emerge as a result of environmental filtering can dramatically improve our ability to analyse any environment in depth as well as advancing our knowledge on how the response...

["Biodiversity","Biogeography","Bioinformatics","Microbiology"]
doi:10.7717/peerj.3827
5 citations
264 downloads
1,112 views

Background Primary biodiversity records (PBR) are essential in many areas of scientific research as they document the biodiversity through time and space. However, concerns about PBR quality and fitness-for-use have grown, especially as derived from taxonomical,...

["Biodiversity","Biogeography","Bioinformatics","Ecosystem Science","Zoology"]
doi:10.7717/peerj.2743
7 citations
399 downloads
2,281 views

Background Techniques for reconstructing geographical history along a phylogeny can answer many questions of interest about the geographical origins of species. Bayesian models based on the assumption that taxa move through a diffusion process have found many applications....

["Biogeography","Bioinformatics","Computational Biology"]
doi:10.7717/peerj.2406
23 citations
1,380 downloads
5,755 views

Oxygen minimum zones (OMZ) are areas in the global ocean where oxygen concentrations drop to below one percent. Low oxygen concentrations allow alternative respiration with nitrate and nitrite as electron acceptor to become prevalent in these areas, making them...

["Biogeography","Bioinformatics","Genomics","Marine Biology","Microbiology"]
doi:10.7717/peerj.1924

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