Peer-reviewed Articles

10 downloads
62 views

The Psychrobacter genus is a cosmopolitan and diverse group of aerobic, cold-adapted, Gram-negative bacteria exhibiting biotechnological potential for low-temperature applications including bioremediation. Here, we present the draft genome sequence of a bacterium...

["Bioinformatics","Genomics","Microbiology"]
doi:10.7717/peerj.4402
31 downloads
185 views

Microbial diversity on earth is extraordinary, and soils alone harbor thousands of species per gram of soil. Understanding how this diversity is sorted and selected into habitat niches is a major focus of ecology and biotechnology, but remains only vaguely understood....

["Bioinformatics","Ecology","Microbiology"]
doi:10.7717/peerj.4395
24 downloads
191 views

Background Glycine air polishing has been proved to be safe, comfortable and time-saving. Whether it could substitute ultrasonic scaling to remove dental plaque biofilm during periodontal maintenance remains unclear. The purposes of this study were to evaluate...

["Microbiology","Clinical Trials","Dentistry","Drugs and Devices","Evidence Based Medicine"]
doi:10.7717/peerj.4371
68 downloads
394 views

Corals host diverse microbial communities that are involved in acclimatization, pathogen defense, and nutrient cycling. Surveys of coral-associated microbes have been particularly directed toward Symbiodinium and bacteria. However, a holistic understanding of the...

["Marine Biology","Microbiology"]
doi:10.7717/peerj.4323
55 downloads
354 views

With the emergence of Next Generation Sequencing, major advances were made with regard to identifying viruses in natural environments. However, bioinformatical research on viruses is still limited because of the low amounts of viral DNA that can be obtained for...

["Biodiversity","Genomics","Microbiology","Virology"]
doi:10.7717/peerj.4351
140 downloads
839 views

Microbes in the gut microbiome form sub-communities based on shared niche specialisations and specific interactions between individual taxa. The inter-microbial relationships that define these communities can be inferred from the co-occurrence of taxa across multiple...

["Bioinformatics","Ecology","Microbiology"]
doi:10.7717/peerj.4303
51 downloads
234 views

The eutrophic Bohai Sea receives large amount of suspended material, nutrients and contaminant from terrestrial runoff, and exchanges waters with the northern Yellow Sea through a narrow strait. This coastal region provides an ideal model system to study microbial...

["Biodiversity","Biogeography","Marine Biology","Microbiology"]
doi:10.7717/peerj.4272
50 downloads
553 views

Microorganisms are ubiquitous in freshwater aquatic environments, but little is known about their abundance, diversity, and transport. We designed and deployed a remote-operated water-sampling system onboard an unmanned surface vehicle (USV, a remote-controlled...

["Biodiversity","Bioengineering","Ecosystem Science","Microbiology","Freshwater Biology"]
doi:10.7717/peerj.4290
306 downloads
2,059 views

Pangenomes offer detailed characterizations of core and accessory genes found in a set of closely related microbial genomes, generally by clustering genes based on sequence homology. In comparison, metagenomes facilitate highly resolved investigations of the relative...

["Bioinformatics","Ecology","Genomics","Microbiology"]
doi:10.7717/peerj.4320
41 downloads
513 views

Background Chlamydia pecorum is a globally significant livestock pathogen causing pathology and production losses. The on-farm infection and serological dynamics and the relevance of existing diagnostic tools for diagnosing C. pecorum in livestock remains poorly...

["Microbiology","Veterinary Medicine"]
doi:10.7717/peerj.4296
140 downloads
3,694 views

Patients with myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) often suffer from gastrointestinal symptoms and many are diagnosed with irritable bowel syndrome (IBS). Previous studies, including from our laboratory, have demonstrated that the ME/CFS...

["Microbiology","Molecular Biology","Neurology"]
doi:10.7717/peerj.4282
125 downloads
579 views

Driven by the growing recognition of the influence of the gut microbiota (GM) on human health and disease, there is a rapidly increasing interest in understanding how dietary components, pharmaceuticals and pre- and probiotics influence GM. In vitro colon models...

["Biotechnology","Food Science and Technology","Genetics","Microbiology","Nutrition"]
doi:10.7717/peerj.4268
81 downloads
402 views

Carboxylated multiwalled carbon nanotubes (MWCNTs-COOH) have become a growing concern in terms of their fate and toxicity in aqueous environments. Methane (CH4) is a major product of organic matter degradation in waterlogged environments. In this study, we determined...

["Environmental Sciences","Microbiology","Soil Science","Ecotoxicology","Environmental Impacts"]
doi:10.7717/peerj.4267
212 downloads
1,611 views

With the increase in the availability of metagenomic data generated by next generation sequencing, there is an urgent need for fast and accurate tools for identifying viruses in host-associated and environmental samples. In this paper, we developed a stand-alone...

["Bioinformatics","Genomics","Microbiology","Virology"]
doi:10.7717/peerj.4227
47 downloads
205 views

Haemophilus parasuis is a member of the family Pasteurellaceae and a major causative agent of Glässer’s disease. This bacterium is normally a benign swine commensal but may become a deadly pathogen upon penetration into multiple tissues, contributing to severe...

["Agricultural Science","Biotechnology","Microbiology","Veterinary Medicine"]
doi:10.7717/peerj.4253

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