Peer-reviewed Articles

49 downloads
216 views

Biomaterial scaffolds have the potential to enhance neuronal development and regeneration. Understanding the genetic responses of astrocytes and neurons to biomaterials could facilitate the development of synthetic environments that enable the specification of...

["Bioengineering","Bioinformatics","Cell Biology","Genomics","Neuroscience"]
doi:10.7717/peerj.2829
44 downloads
171 views

Hagenia is an endangered monotypic genus endemic to the topical mountains of Africa. The only species, Hagenia abyssinica (Bruce) J.F. Gmel, is an important medicinal plant producing bioactive compounds that have been traditionally used by African communities as...

["Conservation Biology","Evolutionary Studies","Genomics","Plant Science"]
doi:10.7717/peerj.2846
20 downloads
255 views

Solar salterns are excellent model ecosystems for studying virus-microbial interactions because of their low microbial diversity, environmental stability, and high viral density. By using the power of CRISPR spacers to link viruses to their prokaryotic hosts, we...

["Bioinformatics","Computational Biology","Ecology","Genomics","Microbiology"]
doi:10.7717/peerj.2844
48 downloads
338 views

Background Chrysophytes are protist model species in ecology and ecophysiology and important grazers of bacteria-sized microorganisms and primary producers. However, they have not yet been investigated in detail at the molecular level, and no genomic and only little...

["Biodiversity","Bioinformatics","Ecology","Evolutionary Studies","Genomics"]
doi:10.7717/peerj.2832
35 downloads
170 views

Background The mechanisms by which DNA sequences are expressed is the central preoccupation of molecular genetics. Recently, ourselves and others reported that in the diplomonad protist Giardia lamblia, the coding regions of several mRNAs are produced by ligation...

["Genetics","Genomics","Molecular Biology"]
doi:10.7717/peerj.2861
74 downloads
233 views

Background The oriental melon (Cucumis melo L. var. makuwa) is one of the most important cultivated cucurbits grown widely in Korea, Japan, and northern China. It is cultivated because its fruit has a sweet aromatic flavor and is rich in soluble sugars, organic...

["Agricultural Science","Bioinformatics","Genomics","Molecular Biology","Plant Science"]
doi:10.7717/peerj.2834
179 downloads
731 views

We assessed spatio-temporal patterns of diversity in deep-sea sediment communities using metabarcoding. We chose a recently developed eukaryotic marker based on the v7 region of the 18S rRNA gene. Our study was performed in a submarine canyon and its adjacent slope...

["Biodiversity","Ecology","Genomics","Marine Biology","Zoology"]
doi:10.7717/peerj.2807
44 downloads
154 views

The bacterial genus Rickettsiellabelongs to the order Legionellales in the Gammaproteobacteria, and consists of several described species and pathotypes, most of which are considered to be intracellular pathogens infecting arthropods. Two members of this genus,...

["Evolutionary Studies","Genomics","Microbiology"]
doi:10.7717/peerj.2806
72 downloads
151 views

Whole-genome single-nucleotide polymorphism (SNP) markers are valuable genetic resources for the association and conservation studies. Genome-wide SNP development in many teleost species are still challenging because of the genome complexity and the cost of re-sequencing....

["Aquaculture, Fisheries and Fish Science","Biodiversity","Genomics"]
doi:10.7717/peerj.2664
143 downloads
503 views

We examined RNA-Seq data on 211 biological samples from 24 different Arabidopsis experiments carried out by different labs. We grouped the samples according to tissue types, and in each of the groups, we identified genes that are stably expressed across biological...

["Bioinformatics","Computational Biology","Genetics","Genomics","Molecular Biology"]
doi:10.7717/peerj.2791
112 downloads
394 views

Recent improvements in next-generation sequencing (NGS) technologies can facilitate the obtainment of mitochondrial genomes. However, it is not clear whether NGS could be effectively used to reconstruct the mitogenome with high gene rearrangement. These high rearrangements...

["Evolutionary Studies","Genetics","Genomics","Molecular Biology","Zoology"]
doi:10.7717/peerj.2786
75 downloads
235 views

Many pathogenic mycobacteria are known to cause severe disease in humans and animals. M. avium subspecies paratuberculosis (Map) is the causative agent of Johne’s disease—a chronic wasting disease affecting ruminants such as cattle and sheep, responsible for significant...

["Genomics","Microbiology","Veterinary Medicine","Infectious Diseases"]
doi:10.7717/peerj.2793
65 downloads
192 views

The selection of suitable reference genes is crucial to accurately evaluate and normalize the relative expression level of target genes for gene function analysis. However, commonly used reference genes have variable expression levels in developing skeletal muscle....

["Agricultural Science","Genetics","Genomics","Molecular Biology","Veterinary Medicine"]
doi:10.7717/peerj.2428
236 downloads
1,047 views

Background Viruses strongly influence microbial population dynamics and ecosystem functions. However, our ability to quantitatively evaluate those viral impacts is limited to the few cultivated viruses and double-stranded DNA (dsDNA) viral genomes captured in quantitative...

["Ecology","Genomics","Microbiology","Virology"]
doi:10.7717/peerj.2777
106 downloads
357 views

Complete chloroplast genome sequences have been very useful for understanding phylogenetic relationships in angiosperms at the family level and above, but there are currently large gaps in coverage. We report the chloroplast genome for Helwingia himalaica, the...

["Genomics","Plant Science"]
doi:10.7717/peerj.2734

Top subject areas - Articles

Top subject areas - People

View all subject areas