Peer-reviewed Articles - General

46 downloads
214 views

Oral squamous cell carcinoma (OSCC) is a major malignant cancer of the head and neck. Long non-coding RNAs (lncRNAs) have emerged as critical regulators during the development and progression of cancers. This study aimed to identify a lncRNA-related signature with...

["Bioinformatics","Oncology","Computational Science"]
doi:10.7717/peerj.5307
50 downloads
434 views

Bias in underwater visual census has always been elusive. In fact, the choice of sampling method and the behavioural traits of fish are two of the most important factors affecting bias, but they are still treated separately, which leads to arbitrarily chosen sampling...

["Animal Behavior","Aquaculture, Fisheries and Fish Science","Ecology","Marine Biology","Computational Science"]
doi:10.7717/peerj.5378
59 downloads
290 views

Synechocystis gathered momentum in modelling studies and biotechnological applications owing to multiple factors like fast growth, ability to fix carbon dioxide into valuable products, and the relative ease of genetic manipulation. Synechocystis physiology and...

["Biochemistry","Biotechnology","Cell Biology","Mathematical Biology","Computational Science"]
doi:10.7717/peerj.5256
39 downloads
360 views

Cortical morphology is known to differ with age, as measured by cortical thickness, fractal dimensionality, and gyrification. However, head motion during MRI scanning has been shown to influence estimates of cortical thickness as well as increase with age. Studies...

["Neuroscience","Radiology and Medical Imaging","Computational Science"]
doi:10.7717/peerj.5176
72 downloads
505 views

Background There are many problems with fitness trackers, such as device usability, which limit their large-scale application, and relevant studies are limited in terms of their sample size and evaluation methods. The purpose of the study was to evaluate the perceived...

["Pharmacology","Public Health","Human-Computer Interaction","Computational Science","Data Science"]
doi:10.7717/peerj.5350
85 downloads
639 views

Although most of the cervical cancer cases are reported to be closely related to the Human Papillomavirus (HPV) infection, there is a need to study genes that stand up differentially in the final actualization of cervical cancers following HPV infection. In this...

["Bioinformatics","Computational Biology","Pathology","Computational Science","Data Mining and Machine Learning"]
doi:10.7717/peerj.5285
110 downloads
907 views

The demand for reproducible research is on the rise in disciplines concerned with data analysis and computational methods. Therefore, we reviewed current recommendations for reproducible research and translated them into criteria for assessing the reproducibility...

["Science Policy","Computational Science","Data Science","Spatial and Geographic Information Science"]
doi:10.7717/peerj.5072
55 downloads
228 views

Time-resolved phylogenetic methods use information about the time of sample collection to estimate the rate of evolution. Originally, the models used to estimate evolutionary rates were quite simple, assuming that all lineages evolve at the same rate, an assumption...

["Bioinformatics","Genetics","Computational Science"]
doi:10.7717/peerj.5140
112 downloads
446 views

Agricultural greenhouse plant images with complicated scenes are difficult to precisely manually label. The appearance of leaf disease spots and mosses increases the difficulty in plant segmentation. Considering these problems, this paper proposed a statistical...

["Agricultural Science","Plant Science","Computational Science"]
doi:10.7717/peerj.5036
48 downloads
369 views

Supertree methods enable the reconstruction of large phylogenies. The supertree problem can be formalized in different ways in order to cope with contradictory information in the input. Some supertree methods are based on encoding the input trees in a matrix; other...

["Bioinformatics","Computational Biology","Evolutionary Studies","Taxonomy","Computational Science"]
doi:10.7717/peerj.4987
133 downloads
767 views

Quantitative analysis of shape and form is critical in many biological disciplines, as context-dependent morphotypes reflect changes in gene expression and physiology, e.g., in comparisons of environment-dependent phenotypes, forward/reverse genetic assays or shape...

["Computational Biology","Ecology","Computational Science"]
doi:10.7717/peerj.4861
134 downloads
1,272 views

Dot plots are widely used to quickly compare sequence sets. They provide a synthetic similarity overview, highlighting repetitions, breaks and inversions. Different tools have been developed to easily generated genomic alignment dot plots, but they are often limited...

["Bioinformatics","Genomics","Computational Science"]
doi:10.7717/peerj.4958
102 downloads
543 views

Transcutaneous spinal cord stimulation (tSCS) has been extensively studied due to its promising application in motor function restoration. Many previous studies have explored both the essential mechanism of action and the methods for determining optimal stimulation...

["Bioengineering","Neuroscience","Computational Science"]
doi:10.7717/peerj.4921
91 downloads
458 views

When the task is reading nonwords aloud, skilled adult readers are very variable in the responses they produce: a nonword can evoke as many as 24 different responses in a group of such readers. Why is nonword reading so variable? We analysed a large database of...

["Cognitive Disorders","Psychiatry and Psychology","Computational Science"]
doi:10.7717/peerj.4879
174 downloads
434 views

Estimating the depth of anaesthesia (DoA) in operations has always been a challenging issue due to the underlying complexity of the brain mechanisms. Electroencephalogram (EEG) signals are undoubtedly the most widely used signals for measuring DoA. In this paper,...

["Anesthesiology and Pain Management","Statistics","Computational Science"]
doi:10.7717/peerj.4817

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