Preprints (not yet peer-reviewed)

1 download
26 views

Background. Accurate time-energy budgets summarise an animal’s energy expenditure in a given environment and are potentially a sensitive indicator of how an animal responds to changing resources. Deriving accurate time-energy budgets requires a precise measure...

["Animal Behavior","Ecology","Marine Biology","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.26570v1
33 downloads
113 views

Stack Overflow has become a fundamental element of developer toolset. Such influence increase has been accompanied by an effort from Stack Overflow community to keep the quality of its content. One of the problems which jeopardizes that quality is the continuous...

["Data Mining and Machine Learning","Data Science","Social Computing","Software Engineering"]
doi:10.7287/peerj.preprints.26555v1
20 downloads
50 views

Clustering is a scientific method which finds the clusters of data and many related methods are traditionally researched for long terms. Bayesian nonparametrics is statistics which can treat models having infinite parameters. Chinese restaurant process is used...

["Data Mining and Machine Learning","Data Science","Software Engineering"]
doi:10.7287/peerj.preprints.26533v1
104 downloads
177 views

Background. Office of Academic Affairs (OAA), Office of Student Life (OSL) and Information Technology Helpdesk (ITD) are support functions within a university which receives hundreds of email messages on the daily basis. A large percentage of emails received by...

["Artificial Intelligence","Data Mining and Machine Learning","Natural Language and Speech"]
doi:10.7287/peerj.preprints.26531v1
27 downloads
85 views

Homegardens are defined as less complex agroforests which look like and function as natural forest ecosystems but are integrated into agricultural management systems located around houses. Study on the factor affecting the diversity of plant resource in homegardens...

["Agricultural Science","Biodiversity","Conservation Biology","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.26519v1
29 downloads
82 views

A significant approach for the discovery of biological regulatory rules of genes, protein and their inheritance relationships is the extraction of meaningful patterns from biological sequence data.The existing algorithms of sequence pattern discovery, like MSPM...

["Computational Biology","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.26471v1
66 downloads
133 views

Collaborative filtering (CF) is a popular technique in recommendation study. Concretely, items which are recommended to user are determined by surveying her/his communities. There are two main CF approaches, which are memory-based and model-based. I propose a new...

["Algorithms and Analysis of Algorithms","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.26444v1
228 downloads
228 views

Background. Automated Essay Scoring (AES) is an area which falls at the intersection of computing and linguistics. AES systems conduct a linguistic analysis of a given essay or prose and then estimates the writing skill or the essay quality in the form a numeric...

["Artificial Intelligence","Computational Linguistics","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.3518v1
228 downloads
307 views

Despite recent efforts that have produced data sets with hundreds and thousands of gene regions to resolve regions of the tree of life, recalcitrant nodes persist and disagreement among genes as well as disagreement between individual gene trees and species trees...

["Evolutionary Studies","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.3489v1
117 downloads
385 views

A significant portion of biomedical literature is represented in a manner that makes it difficult for consumers to find or aggregate content through a computational query. One approach to facilitate reuse of the scientific literature is to structure this information...

["Bioinformatics","Data Mining and Machine Learning","Data Science"]
doi:10.7287/peerj.preprints.3469v1
40 downloads
193 views

The immune system protects a host from foreign pathogens. In rare cases, the immune system can attack the cells of the host organism causing autoimmune diseases. We outline a computational framework that combines bioinformatics and network analysis with an emerging...

["Bioinformatics","Computational Biology","Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.3217v3
48 downloads
108 views

The conditional mutual information \(I(X;Y|Z)\) measures the average information that X and Y contain about each other given Z. This is an important primitive in many learning problems including conditional independence testing, graphical model inference, causal...

["Data Mining and Machine Learning","Data Science"]
doi:10.7287/peerj.preprints.3345v1
233 downloads
626 views

Computational models in biology encode molecular and cell biological processes. These models often can be represented as biochemical reaction networks. Studying such networks, one is mostly interested in systems that share similar reactions and mechanisms. Typical...

["Bioinformatics","Computational Biology","Data Mining and Machine Learning","Data Science"]
doi:10.7287/peerj.preprints.1479v3
15 downloads
88 views

Given a dataset \(\mathcal{R}=\{R_1, R_2, \dots, R_r\}\) of \(r\)~records of waitlisted incoming freshman students (WIFS), where for any \(i=1, 2, \dots, r\), \(R_i\) is a \((m+1)\)--tuple \((O_i, P_i^{(1)}, P_i^{(2)}, \dots, P_i^{(m)})\), \(O_i\) is any one in...

["Data Mining and Machine Learning"]
doi:10.7287/peerj.preprints.3312v1
45 downloads
112 views

We present GenotypeAnalytics (GA), a RESTFul service that makes it possible to mine association rules from Single Nucleotide Polymorphism (SNP) datasets using standard web browsers. GA can speed up and simplify the analysis of this massive amount of data, highlighting...

["Bioinformatics","Computational Biology","Data Mining and Machine Learning","Data Science","World Wide Web and Web Science"]
doi:10.7287/peerj.preprints.3299v1
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