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Thanks to excellent instructions in this paper and open source code, I was able to get PeptideBuilder examples running on my ubuntu machine. For me, I had to change the first line in runUnitTests.sh to

#!/bin/bash

Also, as noted in the paper, I needed the biopython library, which I obtained with pip:

pip install biopython # using sudo

The unit tests (so far) fail for me, for...

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virtual machine open source code reproducibility
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