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The 182 Mb assembly reported here, which is a subset of the Boothby et al assembly, should not have been submitted to the NCBI as a WGS submission.

The NCBI Whole Genome Shotgun Submissions page explicitly states:

Nucleotide sequences must conform to the following standards: **Submitted sequences must be assembled from data experimentally det...

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WGS NCBI Accession Submission
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