Where is GRCm37.71 available from?
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I was not able to find it at the given URL.
The newest version of GRCm37 I could find was from Ensembl build 67 at (ftp://ftp.ensembl.org/pub/release-67/gtf/mus_musculus/Mus_musculus.NCBIM37.67.gtf.gz)
The par.sim file references a "Mus.gtf" so I am unable to verify what version you actually used.
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