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Supplemental Information

S1: Model Version V1 from Figure 4

Extracted reaction R3 from BIOMD0000000107, release number 8 (June 2007) of BioModels Database.

DOI: 10.7287/peerj.preprints.640v1/supp-1

S2: Model Version V2 from Figure 4

Extracted reaction R3 from BIOMD0000000107, release number 25 (June 2013) of BioModels Database.

DOI: 10.7287/peerj.preprints.640v1/supp-2

S3: Unix’ diff on S1 and S2

Differences between S1 and S2 obtained by executing Unix’ diff with diff S1.xml S2.xml > S3.xml.

DOI: 10.7287/peerj.preprints.640v1/supp-3

S4: BiVeS on S1 and S2

Differences between S1 and S2 obtained by executing BiVeS with java -jar BiVeS-fat.jar S1.xml S2.xml > S4.xml.

DOI: 10.7287/peerj.preprints.640v1/supp-4

Additional Information

Competing Interests

The authors declare they have no competing interests.

Author Contributions

Martin Scharm conceived and designed the experiments, performed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Olaf Wolkenhauer conceived and designed the experiments, analyzed the data, wrote the paper, reviewed drafts of the paper.

Dagmar Waltemath conceived and designed the experiments, analyzed the data, wrote the paper, reviewed drafts of the paper.

Funding

MS and DW are funded by the German Federal Ministry of Education and Research (e:Bio program SEMS, FKZ 031 6194). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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