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Supplemental Information

Command pipeline for tallying polymorphic positions

DOI: 10.7287/peerj.preprints.512v1/supp-1

Additional Information

Competing Interests

The authors declare that no competing interests exist.

Author Contributions

Kevin Weitemier conceived and designed the experiments, performed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Shannon C. K. Straub performed the experiments, analyzed the data, reviewed drafts of the paper.

Mark Fishbein analyzed the data, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Aaron Liston conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

Illumina reads for each samples will be placed in the NCBI Sequence Read Archive, accession numbers will be provided (in Table 1) prior to publication.

Data Deposition

The following information was supplied regarding the deposition of related data:

Custom scripts are available from github:

www.github.com/listonlab/polymorphic_read_counter_bwaPileup

www.github.com/listonlab/fastq_collapse

Funding

Funding for this work is supported by the United States National Science Foundation Systematic Biology program DEB 0919583 and DEB 0919389. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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