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Supplemental Information

Expanded Phylogenetic Tree

The Expanded Phylogenetic Tree. In this figure all of the clades have been expanded to show the leaf nodes.

DOI: 10.7287/peerj.preprints.499v1/supp-1

Alignment of the unusual sequence to the prototypes of the three H9N2 hemagglutinin lineages

This is an alignment produced using clustalw for the nucleotide sequences of the Shandong sequence from 1999 to the prototype sequences from the three previously determined lineages.

DOI: 10.7287/peerj.preprints.499v1/supp-2

Model test results for the evaluation of the different amino acid substitution models used to build the phylogenetic trees

Model test results for the evaluation of the different amino acid substitution models used to build the phylogenetic trees. Results are evaluated using Bayesian Information Criteria, Akaike's Information Criteria and Log Likelihood.

DOI: 10.7287/peerj.preprints.499v1/supp-3

Model test results for the evaluation of the different nucleotide substitution models used to build the phylogenetic trees

Model test results for the evaluation of the different nucleotide substitution models used to build the phylogenetic trees. Results are evaluated using Bayesian Information Criteria, Akaike's Information Criteria and Log Likelihood.

DOI: 10.7287/peerj.preprints.499v1/supp-4

This contains the raw protein and nucleotide sequence files in fasta format

There are two directories one for the protein sequences and a second for the nucleotide sequences. There are also two MEGA files that include the nucleotide alignment (.mas file) and the phylogenetic trees (.mts file).

DOI: 10.7287/peerj.preprints.499v1/supp-5

Additional Information

Competing Interests

The authors have no competing interests.

Author Contributions

Andrew R Dalby conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Munir Iqbal conceived and designed the experiments, wrote the paper, reviewed drafts of the paper.

Funding

The work presented here is not funded by any specific grant funding.


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