Visitors   Views   Downloads
NOT PEER-REVIEWED
"PeerJ Preprints" is a venue for early communication or feedback before peer review. Data may be preliminary.

A peer-reviewed article of this Preprint also exists.

View peer-reviewed version

Supplemental Information

A figure of SNPs and read coverage over all chromosomes for YP-1, S. galapagense, and S. pimpinellifolium.

DOI: 10.7287/peerj.preprints.377v1/supp-1

A table of putative gaps greater than 20 bp in YP-1, S. galapagense, and S. pimpinellifolium.

DOI: 10.7287/peerj.preprints.377v1/supp-2

A table of putatively missing genes in YP-1, S. galapagense, and S. pimpinellifolium.

DOI: 10.7287/peerj.preprints.377v1/supp-3

A table of putative insertions in S. pimpinellifolium.

DOI: 10.7287/peerj.preprints.377v1/supp-4

A vcf of H1706 SNPS and indels.

DOI: 10.7287/peerj.preprints.377v1/supp-5

A graph of phylogenetic topologies over all other chromosomes.

DOI: 10.7287/peerj.preprints.377v1/supp-6

De novo assembly mapping results.

DOI: 10.7287/peerj.preprints.377v1/supp-7

A list of putative gaps in sequenced accessions.

DOI: 10.7287/peerj.preprints.377v1/supp-8

A list of deleted genes and predicted functions.

DOI: 10.7287/peerj.preprints.377v1/supp-9

Putative insertions in LA1589.

DOI: 10.7287/peerj.preprints.377v1/supp-10

PAML site-branch test analysis results.

DOI: 10.7287/peerj.preprints.377v1/supp-11

Whole genome phylogeny results for all chromosomes.

DOI: 10.7287/peerj.preprints.377v1/supp-13

Genes predicted to be in introgressions in H1706 genome.

DOI: 10.7287/peerj.preprints.377v1/supp-14

Additional Information

Competing Interests

Susan R Strickler, Aureliano Bombarely, Naama Menda, Gregory B Martin, and Lukas A Mueller are employed by The Boyce Thompson Institute for Plant Research; Jesse D Munkvold is employed by Keygene, Inc. Gregory B Martin is an Academic Editor for PeerJ. The authors declare that they have no competing interests.

Author Contributions

Susan R Strickler conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Aureliano Bombarely conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Jesse D Munkvold conceived and designed the experiments, performed the experiments, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Naama Menda contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Gregory B Martin conceived and designed the experiments, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Lukas A Mueller reviewed drafts of the paper.

Grant Disclosures

The following grant information was disclosed by the authors:

National Science Foundation grant IOS-1025642 (GBM)

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

GenBank SRA SRX520161 and SRX521582

Solgenomics: ftp://ftp.solgenomics.net/genomes/

Funding

This study was supported by startup funds from the Boyce Thompson Institute for Plant Research (LAM) and by National Science Foundation grant IOS-1025642 (GBM). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


Add your feedback

Before adding feedback, consider if it can be asked as a question instead, and if so then use the Question tab. Pointing out typos is fine, but authors are encouraged to accept only substantially helpful feedback.

Some Markdown syntax is allowed: _italic_ **bold** ^superscript^ ~subscript~ %%blockquote%% [link text](link URL)
 
By posting this you agree to PeerJ's commenting policies