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Supplemental Information

Figure S1

Venn graphs illustrating the overlaps between 1) BALSA, 2) the six individual callers including Atlas2-SNP (Atlas), Freebayes, GATK HaplotypeCaller (HC), Samtools, GATK UnifiedGenotyper (UG) and Mutect, and 3) the known variants on SNP.

DOI: 10.7287/peerj.preprints.373v1/supp-2

Figure S2

Venn graphs illustrating the overlaps between 1) BALSA, 2) the six individual callers including Atlas2-SNP (Atlas), Freebayes, GATK HaplotypeCaller (HC), Samtools, GATK UnifiedGenotyper (UG) and Varscan, and 3) the known variants on Indel.

DOI: 10.7287/peerj.preprints.373v1/supp-3

Table S1, S2, S3, S4, S5, S6

DOI: 10.7287/peerj.preprints.373v1/supp-4

Additional Information

Competing Interests

The authors declare they have no competing interests.

Author Contributions

Ruibang Luo conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Yiu-Lun Wong performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, reviewed drafts of the paper.

Wai-Chun Law performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Lap-Kei Lee analyzed the data, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Chi-Man Liu analyzed the data, reviewed drafts of the paper.

Jeanno Cheung analyzed the data, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Tak-Wah Lam conceived and designed the experiments, wrote the paper, reviewed drafts of the paper.

Grant Disclosures

The following grant information was disclosed by the authors:

Hong Kong GRF HKU-713512E and ITF GHP/011/12.

Funding

This work was funded by Hong Kong GRF (General Research Fund) HKU-713512E and ITF (Innovation and Technology Fund) GHP/011/12. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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