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Out of Asia: Mitochondrial evolutionary history of the globally introduced supralittoral isopod Ligia exotica

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Preprint: Out of Asia: Mitochondrial evolutionary history of the globally introduced supralittoral isopod Ligia exotica https://t.co/gt89cZSCsh https://t.co/iG8Ttp79vY
117 days ago
PJpreprint: Out of Asia: Mitochondrial evolutionary history of the globally introduced supralittoral isopod Ligia exotica https://t.co/SLi1YEdjvS
RT @PLOSPaleo: Out of Asia: Mitochondrial evolutionary history of the globally introduced supralittoral isopod Ligia exotica https://t.co/N…
Out of Asia: Mitochondrial evolutionary history of the globally introduced supralittoral isopod Ligia exotica https://t.co/NCou4USLFv
118 days ago
Out of Asia: Mitochondrial evolutionary history of the globally introduced supralittoral isopod Ligia exotica https://t.co/QCMCZ3MQFC
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Supplemental Information

Supplemental Information

Table S1. Information on the samples included in this study. ID labels correspond with those used in the figures.

Table S2. Settings for Maximum Likelihood and Bayesian analyses. A All others default; B Average Standard Deviation of Split Frequencies; C estimated in Tracer v.1.6; D Effective Sample Size; E Potential Scale Reduction Factor for all parameters.

Table S3. A. Support for the clades defined in Figure 2 from different methods and substitution models for the 16S rDNA dataset.

B. Support for the clades defined in Figure 2 from different methods and substitution models for the 16S rDNA and 12S rDNA concatenated dataset. n/a = not applicable (i.e., relationship could not be examined with this dataset).

DOI: 10.7287/peerj.preprints.3497v1/supp-1

DNA alignment in Nexus format

DOI: 10.7287/peerj.preprints.3497v1/supp-2

Concatenated 16S rDNA and 12S rDNA alignment

DOI: 10.7287/peerj.preprints.3497v1/supp-3

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Luis A Hurtado conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables.

Mariana Mateos conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables.

Chang Wang performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, reviewed drafts of the paper.

Carlos A Santamaria performed the experiments, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Jongwoo Jung performed the experiments, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Valiallah Khalaji-Pirbalouty performed the experiments, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Won Kim contributed reagents/materials/analysis tools, reviewed drafts of the paper.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

The new 16S rDNA sequences described here will be accessible via GenBank accession numbers KX447715-KX447756. Details are provided in TableS1. Because these sequences will not be released until publication of the manuscript, we have provided a DNA sequence alignment of the sequences used in this study as a Supplemental File labeled "Ligia_exotica_cinerascens_alignment_140seqs_nexus.txt".

Data Deposition

The following information was supplied regarding data availability:

The research in this article did not generate any code. The raw data (i.e., DNA sequences) have been deposited in GenBank to be released upon publication of this manuscript. The only other relevant file is the DNA alignment, which we have uploaded as a Supplemental file for review, and for release upon publication of this manuscript.

Funding

Funding was provided by a NSF grant DEB 0743782 to Luis A. Hurtado and Mariana Mateos, TAMU-CONACyT grants to Luis A. Hurtado, and Hispanic Leaders in Agriculture and the Environment Program Fellowship and Community Impact Funds to Carlos A. Santamaria. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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