Fig S1. ML phylogenies of 8 proteins involved in C5 pathway for the heme biosynthesis (with full sequence names)
We provide the maximum-likelihood bootstrap values (MLBPs), which are equal or greater than 50%. Color-coding for subtrees/branches are same as described in Fig. 2. Page 1, glutamyl-tRNA reductase (GTR). Page 2, glutamate-1-semialdehyde 2,1-aminomutase (GSAT). Page 3, delta-aminolevulinic acid dehydratase (ALAD). Page 4, porphobilinogen deaminase (PBGD). Page 5, Uroporphyrinogen III synthase (UROS). Page 6, uroporphyrinogen decarboxylase (UROD). Page 7, coproporphyrinogen oxidase (CPOX). Page 8, protoporphyrinogen IX oxidase (PPOX). Page 9, ferrochelatase (FeCH).
Fig S2. ML phylogenies of 7 proteins involved in the Chl a biosynthetic pathway (with full sequence names)
The details of this figure are same as those of Fig. S1. Page 1, ChlD, one of the two nucleus-encoded subunits of Mg-chelatase (MgCH). Page 2, ChlH, the other nucleus-encoded subunit of MgCH. Page 3, S-adenosylmethionine:Mg-protoporphyrin O-methyltransferase (MgPMT). Page 4, divinyl chlorophyllide a 8-vinyl-reductase using ferredoxin for electron donor (F-DVR). Page 5, divinyl chlorophyllide a 8-vinyl-reductase using NADPH for electron donor (N-DVR). Page 6, light-dependent protochlorophyllide reductase (POR). Page 7, chlorophyll synthase (CS).
Fig S3. ML phylogenies of 7 proteins involved in the non-mevalonate pathway for IPP biosynthesis (with full sequence name)
The details of this figure are same as those of Fig. S1. Page 1, 1-deoxy-D-xylulose-5-phosphate (DXP) synthase (DXS). Page 2, DXP reductoisomerase (IspC/DXR). Page 3, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD). Page 4, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (IspE). Page 5, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF). Page 6, 1-hydroxy-2-methyl-2-butenyl 4-diphosphate (HMB-PP) synthase (IspG). Page 7, HMB-PP reductase (IspH).