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Genetic diversity analysis of the coat protein gene revealed strong evolutionary constraints on Ornithogalum mosaic virus

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362 days ago
Strong evolutionary constraints on Ornithogalum mosaic virus https://t.co/8yuRRSFBQV https://t.co/8Sk31wImOX
362 days ago
Genetic diversity analysis of the coat protein gene revealed strong evolutionary constraints on Ornithogalum mosaic virus https://t.co/oEjwveEjsk
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Supplemental Information

Table S1

OrMV isolates used in this study

DOI: 10.7287/peerj.preprints.3463v1/supp-1

Table S2

Recombination events detected in OrMV CP gene by RDP4 Suites

DOI: 10.7287/peerj.preprints.3463v1/supp-2

Table S3

Selection analyses in OrMV CP gene (a) Results of CODEML analyses of selective constraint for CP gene of OrMV. (b) Codon positions under positive selection

DOI: 10.7287/peerj.preprints.3463v1/supp-3

Figure S1 Bayesian Maximum clade credibility (MCC) chronogram inferred from the CP gene of the recombination-free isolates of OrMV

The tree is scaled to time generated under the relaxed clock and constant demographic models. Posterior probabilities are shown at major nodes.

DOI: 10.7287/peerj.preprints.3463v1/supp-4

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Fangluan Gao conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Zhenguo Du reviewed drafts of the paper.

Jianguo Shen conceived and designed the experiments, reviewed drafts of the paper.

Hongkai Yang prepared figures and/or tables.

Furong Liao conceived and designed the experiments, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

The OrMV isolates used in this study is provided as Table S1.

Funding

This work was supported by grants from Fujian Natural Science Funds for Distinguished Young Scholar (Grant No. 2014J06008) and the Training Program of Fujian Excellent Talents in University. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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