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Supplemental Information

Supplemental Movie 1

A single optical plane, captured with light sheet fluorescence microscopy, of the anterior bulb region of the gut of a larval zebrafish, colonized with a GFP-expressing Plesiomonas species.

DOI: 10.7287/peerj.preprints.3135v2/supp-1

Supplemental Movie 2

Microsoft Word - Parthasarathy_Monitoring_Microbial_Communities_2017_preprint.docx Rendering of a three-dimensional light sheet fluorescence microscopy image of a commensal Aeromonas species in the gut of a larval zebrafish, as in Ref. [Wiles, Jemielita, et al. 2016].

DOI: 10.7287/peerj.preprints.3135v2/supp-2

Additional Information

Competing Interests

The author declares that they have no competing interests.

Author Contributions

Raghuveer Parthasarathy conceived and designed the experiments, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Animal Ethics

The following information was supplied relating to ethical approvals (i.e., approving body and any reference numbers):

All procedures were approved by the University of Oregon Institutional Animal Care and Use Committee.

Data Deposition

The following information was supplied regarding data availability:

The research in this article did not generate any data or code; it is a review article.


Research reported in this publication was supported by the NIH as follows: NIGMS award P50GM098911 and NICHD award P01HD22486; the latter provided support for the University of Oregon Zebrafish Facility. The content is solely the responsibility of the authors and does not represent the official views of the NIH. Research reported in this publication was also supported by the National Science Foundation under award numbers 0922951 and 1427957; the M.J. Murdock Charitable Trust; a Scialog Program grant sponsored jointly by Research Corporation for Science Advancement and the Gordon and Betty Moore Foundation through grant to the University of Oregon by the Gordon and Betty Moore and Simons Foundations; and the Kavli Microbiome Ideas Challenge, a project led by the American Society for Microbiology in partnership with the American Chemical Society and the American Physical Society and supported by The Kavli Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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