Arsenophonus and Sodalis replacements shape evolution of symbiosis in louse flies

Department of Parasitology, University of South Bohemia, České Budějovice, Czech Republic
Department of Molecular Biology, University of South Bohemia, České Budějovice, Czech Republic
Institute of Parasitology, Biology Centre, ASCR, v.v.i., České Budějovice, Czech Republic
Department of Biodiversity, University of Limpopo, Sovenga, South Africa
DOI
10.7287/peerj.preprints.3057v1
Subject Areas
Biodiversity, Bioinformatics, Evolutionary Studies
Keywords
Arsenophonus, Sodalis, Wolbachia, Louse Flies, Replacements, Phylogeny
Copyright
© 2017 Šochová et al.
Licence
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Preprints) and either DOI or URL of the article must be cited.
Cite this article
Šochová E, Husník F, Nováková E, Halajian A, Hypša V. 2017. Arsenophonus and Sodalis replacements shape evolution of symbiosis in louse flies. PeerJ Preprints 5:e3057v1

Abstract

Symbiotic interactions between insects and bacteria are ubiquitous and form a continuum from loose facultative symbiosis to greatly intimate and stable obligate symbiosis. In blood-sucking insects living exclusively on vertebrate blood, obligate endosymbionts are essential for hosts and hypothesized to supplement B-vitamins and cofactors missing from their blood diet. The role and distribution of facultative endosymbionts and their evolutionary significance as seeds of obligate symbioses are much less understood. Here, using phylogenetic approaches, we focus on the Hippoboscidae phylogeny as well as the stability and dynamics of obligate symbioses within this bloodsucking group. In particular, we demonstrate a new potentially obligate lineage of Sodalis co-evolving with the Olfersini subclade of Hippoboscidae. We also show several likely facultative Sodalis lineages closely related to Sodalis praecaptivus (HS strain) and suggest repeated acquisition of novel symbionts from the environment. Similar to Sodalis, Arsenophonus endosymbionts also form both obligate endosymbiotic lineages co-evolving with their hosts (Ornithomyini and Ornithoica groups) as well as possibly facultative infections incongruent with the Hippoboscidae phylogeny. Finally, we reveal substantial diversity of Wolbachia strains detected in Hippoboscidae samples falling into three supergroups: A, B, and the most common F. Altogether, our results prove the associations between Hippoboscoidea and their symbiotic bacteria to undergo surprisingly dynamic, yet selective, evolutionary processes strongly shaped by repeated endosymbiont replacements. Interestingly, obligate symbionts only originate from two endosymbiont genera, Arsenophonus and Sodalis, suggesting that the host is either highly selective about its future obligate symbionts or that these two lineages are the most competitive when establishing symbioses in louse flies.

Author Comment

This study deals with Hippoboscidae bloodsucking parasites and their endosymbiotic bacteria. Here we used phylogenetics to reconstruct host phylogeny, which has not been fully resolved, and their endosymbionts to test the stability and dynamics of obligate symbioses within this bloodsucking group. We revealed several lineages of obligate Arsenophonus and new potentially obligate lineage of Sodalis. Both bacterial genera also present as likely facultative infections incongruent with Hippoboscidae phylogeny. Their close relationship to free-living members of this clades suggests repeated symbiont acquisition from the environment and potential replacement of the former symbiont.

Supplemental Information

Supplemental Data S1: Raw sequences sequenced in this study

DOI: 10.7287/peerj.preprints.3057v1/supp-1

Supplemental Figure S1: Phylogeny of Hippoboscoidea based on mitochondrial genomes

DOI: 10.7287/peerj.preprints.3057v1/supp-2

Supplemental Figure S2: Phylogeny of Hippoboscoidea based on concatenation of 46S, EF, and COI

DOI: 10.7287/peerj.preprints.3057v1/supp-3

Supplemental Figure S3: Phylogeny of Hippoboscoidea based on COI (cytochrome oxidase subunit I) gene

DOI: 10.7287/peerj.preprints.3057v1/supp-4

Supplemental Figure S4: Phylogeny of Hippoboscoidea based on EF(elongation factor) gene

DOI: 10.7287/peerj.preprints.3057v1/supp-5

Supplemental Figure S5: Phylogeny of Hippoboscoidea based on 16S rRNA

DOI: 10.7287/peerj.preprints.3057v1/supp-6

Supplemental Figure S6: Phylogeny of Hippoboscidae based on COI (cytochrome oxidase subunit I) gene

DOI: 10.7287/peerj.preprints.3057v1/supp-7

Supplemental Figure S7: Phylogeny of Hippoboscidae based on EF (elongation factor) gene

DOI: 10.7287/peerj.preprints.3057v1/supp-8

Supplemental Figure S8: Phylogeny of Hippoboscidae based on 16S rRNA

DOI: 10.7287/peerj.preprints.3057v1/supp-9

Supplemental Figure S9: Phylogeny of Arsenophonus bacteria within Hippoboscoidea group

DOI: 10.7287/peerj.preprints.3057v1/supp-10

Supplemental Figure S10: Phylogeny of all Arsenophonus bacteria

DOI: 10.7287/peerj.preprints.3057v1/supp-11

Supplemental Tables S1-5. Information about samples, primers, used sequences, and results

DOI: 10.7287/peerj.preprints.3057v1/supp-12

Supplemental Table S6: Information to raw sequences included in Supplemental Data S1

DOI: 10.7287/peerj.preprints.3057v1/supp-13