10 Citations   Views   Downloads

ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data

View preprint
RT @raw9371: Some how got passed pre-review even through is the same name, design, same database etc as the original just minus a lot of au…
RT @raw9371: Some how got passed pre-review even through is the same name, design, same database etc as the original just minus a lot of au…
Some how got passed pre-review even through is the same name, design, same database etc as the original just minus a lot of authors. https://t.co/eshFFShfgp (original) https://t.co/zSca8UYslD (how?) If you want the story - message me. I worry how easy this was done! Watch out!
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
389 days ago
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @rnomics: ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic bi…
395 days ago
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @microbe_angler: This is cool work but isn’t it a pre-print re-do of a pre-existing pre-print? https://t.co/tywxefbgY1 getting a little…
ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data https://t.co/gjq39E98lh @PeerJPreprints
RT @raw9371: @SilasKieser @biorxiv_bioinfo @sciencePNNL Odd that the same name but different people. https://t.co/eshFFSyQEZ
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @microbe_angler: This is cool work but isn’t it a pre-print re-do of a pre-existing pre-print? https://t.co/tywxefbgY1 getting a little…
395 days ago
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @microbe_angler: This is cool work but isn’t it a pre-print re-do of a pre-existing pre-print? https://t.co/tywxefbgY1 getting a little…
RT @microbe_angler: This is cool work but isn’t it a pre-print re-do of a pre-existing pre-print? https://t.co/tywxefbgY1 getting a little…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @microbe_angler: This is cool work but isn’t it a pre-print re-do of a pre-existing pre-print? https://t.co/tywxefbgY1 getting a little…
395 days ago
RT @microbe_angler: This is cool work but isn’t it a pre-print re-do of a pre-existing pre-print? https://t.co/tywxefbgY1 getting a little…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
RT @MicrobiomDigest: What is going on here? ATLAS package was published in 2017 preprint, but 8 original authors are left off in this 2019…
NOT PEER-REVIEWED
"PeerJ Preprints" is a venue for early communication or feedback before peer review. Data may be preliminary.

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Richard Allen White III conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, performed the computation work, reviewed drafts of the paper.

Joseph Brown conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, performed the computation work, reviewed drafts of the paper.

Sean Colby conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, performed the computation work, reviewed drafts of the paper.

Christopher C Overall conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, performed the computation work, reviewed drafts of the paper.

Joon-Yong Lee contributed reagents/materials/analysis tools, performed the computation work, reviewed drafts of the paper.

Jeremy Zucker contributed reagents/materials/analysis tools, performed the computation work, reviewed drafts of the paper.

Kurt R Glaesemann contributed reagents/materials/analysis tools, wrote the paper, performed the computation work, reviewed drafts of the paper.

Christer Jansson wrote the paper, reviewed drafts of the paper.

Janet K Jansson wrote the paper, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

The following information was supplied regarding data availability:

https://github.com/pnnl/atlas

Funding

This research was provided by the PNNL Laboratory-Directed Research and Development (LDRD) Program at PNNL through the Microbiomes in Transition (MinT) Initiative and the Initiative integrated Plant-Atmosphere-Soil System (iPASS) Initiative. PNNL is a national laboratory operated by Battelle for the Department of Energy (DOE) under contract DE-AC06-76RL01830. A portion of the research was conducted using PNNL Institutional Computing (PIC) at PNNL and at EMSL, a national scientific user facility sponsored by the DOE Office of Biological and Environmental Research and located at PNNL. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


Add your feedback

Before adding feedback, consider if it can be asked as a question instead, and if so then use the Question tab. Pointing out typos is fine, but authors are encouraged to accept only substantially helpful feedback.

Some Markdown syntax is allowed: _italic_ **bold** ^superscript^ ~subscript~ %%blockquote%% [link text](link URL)
 
By posting this you agree to PeerJ's commenting policies