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Capturing variation in floral shape; a virtual3D based morphospace for Pelargonium

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65 days ago
Capturing variation in floral shape; a virtual3D based morphospace for Pelargonium https://t.co/Vx3IV8QwK6 https://t.co/9GO7Wr0Knj
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Supplemental Information

Taxonomic sampling of SPUR and PETAL datasets

Taxonomic sampling of species included in the study. Including individuals per SPUR/PETAL dataset, with locality data and individual number/STEU number when available

DOI: 10.7287/peerj.preprints.27867v1/supp-1

R script Analyse flower shape separate

Supplementary R script describing steps for the analysis of floral morphology on SPUR and PETAL datasets separately using Geometric Morphometric Modelling.

DOI: 10.7287/peerj.preprints.27867v1/supp-2

R script Rescale and Combine datasets

Supplementary R script describing the steps developed to combine the separate SPUR and PETAL datasets into virtual3D individuals and perform a bootstrapping sampling to evaluate consistancy in the virtually created flowers.

DOI: 10.7287/peerj.preprints.27867v1/supp-3

R script Analysing virtual3D dataset

Supplementary R script describing steps for the analysis of floral morphology on virtual3D using Geometric Morphometric Modelling.

DOI: 10.7287/peerj.preprints.27867v1/supp-4

Mean consensus configuration and Procrustes residuals for SPUR and PETAL datasets

Supplementary figure showing mean shape and spread of Procrustes residuals per landmark for (A) SPUR and (B) PETAL datasets

DOI: 10.7287/peerj.preprints.27867v1/supp-5

PC scores

PC scores for SPUR, PETAL, and virtual3D datasets.

DOI: 10.7287/peerj.preprints.27867v1/supp-6

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Sara J. van de Kerke conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper.

Tiemen van Engelenhoven performed the experiments.

Anne van Es performed the experiments.

Laura Schat performed the experiments.

Lisa van Son performed the experiments.

Sverre Vink performed the experiments.

Lia Hemerik conceived and designed the experiments, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper.

Robin van Velzen authored or reviewed drafts of the paper.

M. Eric Schranz authored or reviewed drafts of the paper.

Freek T. Bakker conceived and designed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

Data is available at 4TU.centre for research data, DOI 10.4121/uuid:7457eadf-5ad6-4221-b4ea-85c73b91098b

https://data.4tu.nl/repository/uuid:7457eadf-5ad6-4221-b4ea-85c73b91098b

Funding

The authors received no funding for this work.


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