Data-driven classification of the certainty of scholarly assertions

Center for Plant Biotechnology and Genomics UPM-INIA, Pozuelo de Alarcon, Madrid, Spain
Elsevier Inc., Cambridge, MA, United States
Elsevier Research Collaborations Unit, Jericho, VT, United States
GO FAIR International Support and Coordination Office, Leiden, The Netherlands
DOI
10.7287/peerj.preprints.27829v1
Subject Areas
Bioinformatics, Computational Science, Data Mining and Machine Learning
Keywords
text mining, scholarly communication, certainty, FAIR Data, machine learning
Copyright
© 2019 Prieto et al.
Licence
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Preprints) and either DOI or URL of the article must be cited.
Cite this article
Prieto M, Deus H, De Waard A, Schultes E, García-Jiménez B, Wilkinson MD. 2019. Data-driven classification of the certainty of scholarly assertions. PeerJ Preprints 7:e27829v1

Abstract

The grammatical structures scholars use to express their assertions are intended to convey various degrees of certainty or speculation. Prior studies have suggested a variety of categorization systems for scholarly certainty. However, these have not been objectively tested for their validity, particularly with respect to representing the interpretation by the reader, rather than the intention of the author. In this study, we use a series of questionnaires to determine how researchers classify various scholarly assertions, using three distinct certainty classification systems. We find that there are three categories of certainty perceived by readers: one level of high certainty, and two levels of lower certainty that are somewhat less distinct, but nevertheless show a significant degree of inter-annotator agreement. We show that these categories can be detected in an automated manner, using a machine learning model, with a cross-validation accuracy of 89.2% relative to an author-annotated corpus, and 82.2% accuracy against a publicly-annotated corpus. This finding provides an opportunity for contextual metadata related to certainty to be captured as a part of text-mining pipelines, which currently miss these subtle linguistic cues. We provide an exemplar machine-accessible representation - a Nanopublication - where certainty category is embedded as metadata in a formal, ontology-based manner within text-mined scholarly assertions.

Author Comment

This is a submission to PeerJ for review.

Supplemental Information

Horn’s parallel analysis result for S1

DOI: 10.7287/peerj.preprints.27829v1/supp-1

Horn’s parallel analysis result for S2

DOI: 10.7287/peerj.preprints.27829v1/supp-2

Horn’s parallel analysis result for S3

DOI: 10.7287/peerj.preprints.27829v1/supp-3