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Stenotrophomonas sp. Pemsol isolated from crude oil contaminated soil in Mexico that can degrade polycyclic aromatic hydrocarbons and its whole genome sequence analyzed

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81 days ago
Stenotrophomonas sp. Pemsol isolated from crude oil contaminated soil in Mexico that can degrade polycyclic aromatic hydrocarbons and its whole genome sequence analyzed https://t.co/Fhl3E1nm91 https://t.co/b4Hz35SUfL
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Supplemental Information

Supplementary file 2aTable of COGs comparison statistic between Stenotrophomonas sp. Pemsol and five other PAH degrading bacteria

COGs category comparison betwen Pemsol and and five other PAH degrading bacteria

DOI: 10.7287/peerj.preprints.27617v1/supp-1

Supplementary file 2b: Table for the COGs category comparison betwen Pemsol and selected member of other Stenotrophomonas species

COGs category comparison betwen Pemsol and selected member of other Stenotrophomonas species.

DOI: 10.7287/peerj.preprints.27617v1/supp-2

Tables for the genes involved in the degradation and survival of Pemsol

The tables contain the genes associated with PAH degradation by pemsol and their function, the genes that are on the genomic island, and the genes that are unique to Pemsol

DOI: 10.7287/peerj.preprints.27617v1/supp-3

raw table for figure 2

The table contains the growth of Stenotrophomonas sp. Pemsol in different PAH studies in the 8 days of tolerance studies

DOI: 10.7287/peerj.preprints.27617v1/supp-4

This table contains the growth of Pemsol and other hydrocarbon degrading bacteria tested for their tolerance and growth in PAH in a 20 day tolerance study prior to degradation analysis. It also contain the table for the emulsion test of Pemsol as compared

EACH TABLE represents Stenotrophomonas species' growth in different PAH

DOI: 10.7287/peerj.preprints.27617v1/supp-5

Figures showing the spectra from FTIR,and UPLC MS analysis for the product formed from the degradation of naphthalene by Pemsol

Figure 1 contains FTIR spectrum while figure 2 and 3 contain UPLC MS spectra

DOI: 10.7287/peerj.preprints.27617v1/supp-6

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Temidayo O Elufisan conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Isabel C Rodríguez-Luna performed the experiments, contributed reagents/materials/analysis tools, approved the final draft.

Omotayo O Oyedara contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Alejandro Sánchez-Varela performed the experiments, contributed reagents/materials/analysis tools, approved the final draft.

Armando Hernandez Mendoza contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft, genome sequencing.

Edgar Dantan Gonzalez contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft, genome sequencing and annotation.

Alma D Paz-González performed the experiments, contributed reagents/materials/analysis tools, prepared figures and/or tables, approved the final draft.

Kashif Muhammad performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, approved the final draft.

Gildardo Rivera analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Miguel Á Villalobos-Lopez contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Xianwu Guo conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

cp025780.1

https://www.ncbi.nlm.nih.gov/nuccore/CP025780.1/

Data Deposition

The following information was supplied regarding data availability:

1. National Center for Biotechnology Information (NCBI)

2. NZ_CP025780.1

3. https://www.ncbi.nlm.nih.gov/genome/13685?genome_assembly_id=407830

Funding

This work was supported by the Consejo Nacional de Ciencia y Tecnología (CONACyT)-México (Grant No. 168541), Secretaría de Investigación y Posgrado del Instituto Politécnico Nacional, México. Temidayo Oluyomi Elufisan held scholarships from CONACyT. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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