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Prediction of clusters of miRNA binding sites in mRNA candidate genes of breast cancer

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Preprint: Prediction of clusters of miRNA binding sites in mRNA candidate genes of breast cancer https://t.co/5j4bSFcsyp https://t.co/VitP2XaVoW
158 days ago
RT @microRNA_papers: Prediction of clusters of miRNA binding sites in mRNA candidate genes of breast cancer https://t.co/DeKUUFl8Di
Prediction of clusters of miRNA binding sites in mRNA candidate genes of breast cancer https://t.co/DeKUUFl8Di
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Supplemental Information

Schemes of miRNA interaction with mRNA of candidate genes of breast cancer triple-negative subtype

DOI: 10.7287/peerj.preprints.27583v1/supp-1

Schemes of miRNA interaction with mRNA of candidate genes of breast cancer luminal A and B subtypes

DOI: 10.7287/peerj.preprints.27583v1/supp-2

Schemes of miRNA interaction with mRNA of candidate genes of breast cancer HER2 subtype

DOI: 10.7287/peerj.preprints.27583v1/supp-3

Candidate genes of subtypes of breast cancer, indicating sources of information on their participation in oncogenesis of breast cancer

DOI: 10.7287/peerj.preprints.27583v1/supp-4

Information on miRNAs interacted with genes of breast cancer and other cancer

DOI: 10.7287/peerj.preprints.27583v1/supp-5

The nucleotide sequence of clusters of miRNA binding sites in orthologous candidate genes of triple-negative subtype

DOI: 10.7287/peerj.preprints.27583v1/supp-6

The nucleotide sequence of clusters of miRNA binding sites in orthologous candidate genes of luminal A and B subtypes

DOI: 10.7287/peerj.preprints.27583v1/supp-7

The nucleotide sequence of clusters of miRNA binding sites in orthologous candidate genes of HER2 subtype

DOI: 10.7287/peerj.preprints.27583v1/supp-8

Additional Information

Competing Interests

Ivashchenko Anatoliy Timofeevich is an Academic Reviewer for PeerJ.

Author Contributions

Dana Aisina conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Raigul Niyazova conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Shara Atambayeva conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Anatoliy Ivashchenko conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

Table S1: Candidate genes of subtypes of breast cancer, indicating sources of information on their participation in oncogenesis of breast cancer.

Table S2: Information on predicted miRNAs interacted with breast cancer genes.

Table S3: The nucleotide sequence of clusters of miRNA binding sites in orthologous candidate genes of triple-negative subtype.

Table S4: The nucleotide sequence of clusters of miRNA binding sites in orthologous candidate genes of luminal A and B subtypes.

Table S5: The nucleotide sequence of clusters of miRNA binding sites in orthologous candidate genes of HER2 subtype.

Figure S1: Schemes of miRNA interaction with mRNA of candidate genes of breast cancer triple-negative subtype.

Figure S2: Schemes of miRNA interaction with mRNA of candidate genes of breast cancer luminal A and B subtypes.

Figure S3: Schemes of miRNA interaction with mRNA of candidate genes of breast cancer HER2 subtype.

Funding

The work was carried out with the financial support of the Ministry of Education and Science of the Republic of Kazakhstan within the framework of the grant №AP05132460. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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