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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

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RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
33 days ago
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
34 days ago
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
RT @marc_strous: Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to…
Very impressive work! Really neat implementation of a set of common sense innovations to metagenome binning, can't wait to try it! https://t.co/nA9EW7gOoN via @PeerJPreprints
RT @ZhongWangCA: MetaBAT 2 for metagenome binning, even faster now https://t.co/UCzDUuLEhY
RT @ZhongWangCA: MetaBAT 2 for metagenome binning, even faster now https://t.co/UCzDUuLEhY
RT @ZhongWangCA: MetaBAT 2 for metagenome binning, even faster now https://t.co/UCzDUuLEhY
RT @ZhongWangCA: MetaBAT 2 for metagenome binning, even faster now https://t.co/UCzDUuLEhY
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies https://t.co/uNv9AqLqGU https://t.co/8euVIbphDg
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies https://t.co/d1ZyiRNfWr https://t.co/9QzU8ayA6N
MetaBAT 2 for metagenome binning, even faster now https://t.co/UCzDUuLEhY
47 days ago
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies https://t.co/R3Cp7tVBbB https://t.co/ikwYgrLlNM
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Supplemental Information

A list of metagenome assemblies used to evaluate binning performance

IMG access IDs and Sample names for IMG-100 dataset

DOI: 10.7287/peerj.preprints.27522v1/supp-1

List of parameter sets to evaluate MetaBAT2 on 120 real metagenome assemblies

The parameter sets and their performance comparison to the default parameter set.

DOI: 10.7287/peerj.preprints.27522v1/supp-2

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Dongwan Kang conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Feng Li performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Edward S Kirton performed the experiments, analyzed the data, approved the final draft.

Ashleigh Thomas performed the experiments, prepared figures and/or tables, approved the final draft.

Rob S Egan conceived and designed the experiments, approved the final draft.

Hong An authored or reviewed drafts of the paper, approved the final draft.

Zhong Wang conceived and designed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

https://bitbucket.org/berkeleylab/metabat

Funding

The work was conducted by the US Department of Energy Joint Genome Institute. Dongwan Kang, Edward Kirton, Ashleigh Thomas, Rob Egan, and Zhong Wang’s work was supported by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under Contract No. DE-AC02-05CH11231. Feng Li was supported by an exchange student fellowship from China Scholarship Council (CSC). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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