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Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize

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RT @genomecenter: @jrossibarra: Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize http…
RT @genomecenter: @jrossibarra: Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize http…
@jrossibarra: Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize https://t.co/bGrMO7gOhE https://t.co/AHm9J0rP1D
RT @a_guerrero_z: My preprint has been published today in @PeerJPreprints https://t.co/OYVudPbqMj #AgriculturalScience #EvolutionaryStudies…
RT @a_guerrero_z: My preprint has been published today in @PeerJPreprints https://t.co/OYVudPbqMj #AgriculturalScience #EvolutionaryStudies…
31 days ago
RT @_introgression: peerJ: Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize https://t.c…
RT @_introgression: peerJ: Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize https://t.c…
RT @a_guerrero_z: My preprint has been published today in @PeerJPreprints https://t.co/OYVudPbqMj #AgriculturalScience #EvolutionaryStudies…
31 days ago
My preprint has been published today in @PeerJPreprints https://t.co/OYVudPbqMj #AgriculturalScience #EvolutionaryStudies #Genetics #Genomics
31 days ago
Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize https://t.co/vEbfNuNfvG https://t.co/AI47G6zalD
peerJ: Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize https://t.co/OfMQvI00ZL
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Supplemental Information

Supporting Figure S1 and Tables S10 - S17

DOI: 10.7287/peerj.preprints.27489v1/supp-1

Introgression and recombination at gene models

DOI: 10.7287/peerj.preprints.27489v1/supp-4

SNPs at introgression regions fixed in Mexican highland individuals

DOI: 10.7287/peerj.preprints.27489v1/supp-5

fd output by windows - highland test set

DOI: 10.7287/peerj.preprints.27489v1/supp-6

fd output by windows - lowland null set

DOI: 10.7287/peerj.preprints.27489v1/supp-7

Local recombination rate at grid positions

DOI: 10.7287/peerj.preprints.27489v1/supp-8

Local recombination rate at markers

DOI: 10.7287/peerj.preprints.27489v1/supp-9

R/QTL cross object for RVxPT cross

DOI: 10.7287/peerj.preprints.27489v1/supp-10

Additional Information

Competing Interests

Jeffrey Ross-Ibarra is an Academic Editor for PeerJ.

Author Contributions

Eric Gonzalez-Segovia conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Sergio Pérez-Limon performed the experiments, analyzed the data, authored or reviewed drafts of the paper, approved the final draft.

Carolina Cíntora-Martínez performed the experiments, analyzed the data, authored or reviewed drafts of the paper, approved the final draft.

Alejandro Guerrero-Zavala performed the experiments, analyzed the data, authored or reviewed drafts of the paper, approved the final draft.

Garrett Jansen analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Matthew B Hufford analyzed the data, authored or reviewed drafts of the paper, approved the final draft.

Jeffrey Ross-Ibarra conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Ruairidh J H Sawers conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

Genome sequence data is available from National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (PRJNA511379).

https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511379

Data Deposition

The following information was supplied regarding data availability:

Novel scripts are available at https://github.com/ericgonzalezs/Characterization_of_introgression_from_Zea_mays_ssp._mexicana_to_Mexican_highland_maize.

Funding

This work was supported by UC-MEXUS (CN-15-1476), the National Science Foundation (No. 1546719) and the Consejo Nacional de Ciencia y Tecnología (CB-2015-01 254012). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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