Visitors   Views   Downloads
NOT PEER-REVIEWED
"PeerJ Preprints" is a venue for early communication or feedback before peer review. Data may be preliminary.

Supplemental Information

Homologous genes in the willow MADS-box gene family

DOI: 10.7287/peerj.preprints.27195v1/supp-1

The details of fifteen conserved motif sequences identified in SsMADS genes

DOI: 10.7287/peerj.preprints.27195v1/supp-2

The details of total transcript abundance of SsMADS genes by RPKM annotation

DOI: 10.7287/peerj.preprints.27195v1/supp-3

Sequence logo of the 60 willow MADS-box domains

The logo was generated using the web-based application WebLogo3 ( http://weblogo.threeplusone.com ) with the default parameters. The heights of the symbols within each stack indicate the relative frequency of each amino acid at that position.

DOI: 10.7287/peerj.preprints.27195v1/supp-4

Phylogenetic tree of S. suchowensis and O. sativa MADS-box domains

A total of 60 MADS-box domains from S. suchowensis and 66 from O. sativa were used to construct a NJ tree using MEGA 7. Different shapes and colours represent different species and gene categories.

DOI: 10.7287/peerj.preprints.27195v1/supp-5

Phylogenetic tree of S. suchowensis and P. trichocarpa MADS-box domains

A total of 60 MADS-box domains from S. suchowensis and 103 from P. trichocarpa were used to construct a NJ tree using MEGA 7. Different shapes and colours represent different species and gene categories.

DOI: 10.7287/peerj.preprints.27195v1/supp-6

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Yanshu Qu conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Changwei Bi performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Bing He analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Ning Ye contributed reagents/materials/analysis tools, approved the final draft.

Tongming Yin contributed reagents/materials/analysis tools, approved the final draft.

Li-an Xu conceived and designed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

The latest S. suchowensis genome (version5_2.fa), annotation information (version5_2.gff3), coding sequences (Willow.gene.cds) and protein sequences (Willow.gene.pep) are available at our laboratory website (http://bio.njfu.edu.cn/ss_wrky/).

Funding

This work was supported by the National Key Research and Development Plan of China (2016YFD0600101) and the Program Development of Jiangsu Higher Education Institutions (PAPD). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


Add your feedback

Before adding feedback, consider if it can be asked as a question instead, and if so then use the Question tab. Pointing out typos is fine, but authors are encouraged to accept only substantially helpful feedback.

Some Markdown syntax is allowed: _italic_ **bold** ^superscript^ ~subscript~ %%blockquote%% [link text](link URL)
 
By posting this you agree to PeerJ's commenting policies