Phylogeography of a rare and endemic tree of Western Ghats reveals its ice age dynamics

Indian Institute of Science, Bengaluru, India
Center for studies in Ethnobiology, Biodiversity, and sustainability (CEiBa), Malda, West Bengal, India
Ashoka Trust for Research in Ecology and the Environment (ATREE), Bengaluru, India
DOI
10.7287/peerj.preprints.27043v1
Subject Areas
Biodiversity, Biogeography, Evolutionary Studies
Keywords
Western Ghats, endemic tree, Quaternary period, Syzygium travancoricum, Myrtaceae, glacial refugia
Copyright
© 2018 Ray et al.
Licence
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Preprints) and either DOI or URL of the article must be cited.
Cite this article
Ray R, Ramachandra TV, Ray A. 2018. Phylogeography of a rare and endemic tree of Western Ghats reveals its ice age dynamics. PeerJ Preprints 6:e27043v1

Abstract

The climatic shifts in the Quaternary Period acted as an important driving force for evolution of the world's biodiversity. In this study, responses to the ice age of a rare and endangered tree of Indian Western Ghats, Syzygium travancoricum, was investigated through a combination of molecular data and ecological niche modeling.Results indicate the moderate (nrDNA) to high (cpDNA) population structure, presence of private alleles, and absence of phylogeographic structure. Spatial distribution of diversity does not signifi- cantly support southern colonisation, nor the Palghat Gap as a geographical barrier based on the genetic structure. Combined insights from Ecological Niche Modelling and population history de- picts a probable colonisation of the Western Ghats in the late Miocene or later followed by a split into separate southern and northern populations from the middle to late Pleistocene. The prevalence of favourable conditions in the post-Last interglacial period stimulated rapid population expansion and a very recent decline. The absence of phylogeographic structure and overall climatic stability from Last Interglacial do not offer support to an existence of refugia in the Western Ghats. We con- clude by discussing appropriate conservation measures for this rare and endangered tree based on our findings.

Author Comment

This is a preprint submission to PeerJ Preprints.

Supplemental Information

Figure S1 (a–b): Mismatch distributions based on nuclear and chloroplast sequences

DOI: 10.7287/peerj.preprints.27043v1/supp-2