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First steps towards mitochondrial pan-genomics: Detailed analysis of Fusarium graminearum mitogenomes

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First steps towards mitochondrial pan-genomics: Detailed analysis of Fusarium graminearum mitogenomes https://t.co/EyjloqK3d3 There is a gradual shift from representing a species’ genome by a single reference genome sequence to a pan-genome representation. Pan-genomes …
292 days ago
First steps towards mitochondrial pan-genomics: Detailed analysis of Fusarium graminearum mitogenomes https://t.co/ZT5VmCaCbB
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Supplemental Information

Intron locations, lengths and haplotypes within standard mitochondrial genes of Fusarium graminearum and F. gerlachii strains

DOI: 10.7287/peerj.preprints.27017v1/supp-1

Assembling the pooled data set

DOI: 10.7287/peerj.preprints.27017v1/supp-2

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Balázs Brankovics conceived and designed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Tomasz Kulik conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Jakub Sawicki performed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Katarzyna Bilska performed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Hao Zhang authored or reviewed drafts of the paper, approved the final draft.

G Sybren de Hoog authored or reviewed drafts of the paper, approved the final draft.

Theo AJ van der Lee conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Cees Waalwijk conceived and designed the experiments, performed the experiments, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Anne D van Diepeningen conceived and designed the experiments, performed the experiments, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

The mitochondrial genome sequences described here are accessible via GenBank accession numbers KP966550, KP966551, KP966552, KP966553, KP966554, KP966555, KP966556, KP966557, KP966558, KP966559, KP966560, KP966561, KR011238, NC_025928, MH412632.

Mitochondrial sequence data for the strains sequenced by third party that were assembled and analyzed in this study are available in the Third Party Annotation Section of the DDBJ/ENA/GenBank databases under the accession numbers TPA: BK010538-BK010547.

Data Deposition

The following information was supplied regarding data availability:

European Nucleotide Archive

PRJEB18592, PRJEB18596

Funding

This work was supported by the Division for Earth and Life Sciences (ALW) with financial aid from the Netherlands Organization for Scientific Research (NWO, http://www.nwo.nl/) under grant number 833.13.006. The contributions of Cees Waalwijk were financially supported from the MycoKey project (Horizon2020, nr. 678781). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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