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Staphylococcus aureus viewed from the perspective of 40,000+ genomes

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RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
115 days ago
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
115 days ago
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
117 days ago
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
117 days ago
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
118 days ago
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
Check out the staphopia preprint! https://t.co/kulQFF2HyL @rpetit3 @tdread_emory
RT @tdread_emory: Our preprint "Staphylococcus aureus viewed from the perspective of 40,000+ genomes" is out! Huge effort by @rpetit3 @Pe…
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A peer-reviewed article of this Preprint also exists.

View peer-reviewed version

Supplemental Information

Supplementary Figure 1: Staphopia database schema

DOI: 10.7287/peerj.preprints.26890v2/supp-1

Additional Information

Competing Interests

The authors declare that they have no competing interests. Timothy D Read is an Academic Editor for PeerJ.

Author Contributions

Robert A Petit III conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Timothy D Read conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

Results section analysis - https://github.com/staphopia/staphopia-paper

R Package - https://github.com/staphopia/staphopia-r

StAP - https://github.com/staphopia/staphopia-ap

Web Package - https://github.com/staphopia/staphopia-web

Docker Image - https://hub.docker.com/r/rpetit3/staphopia/

Funding

Funding was from Emory University, Amazon AWS in Education Grant Program, and NIH grants AI091827 and AI121860. The Seven Bridges Cancer Genomics Cloud has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, Contract No. HHSN261201400008C and Task Order No. 17X146 under Contract No. HHSN261201500003I. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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