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Transcriptomic studies reveal a key metabolic pathway contributing to a well-maintained photosynthetic system under drought stress in foxtail millet (Setaria italica L.)

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522 days ago
Transcriptomic studies reveal a key metabolic pathway contributing to a well-maintained photosynthetic system under drought stress in foxtail millet (Setaria italica L.) https://t.co/4zfliatVXE
Transcriptomic studies reveal a key metabolic pathway contributing to a well-maintained photosynthetic system under drought stress in foxtail millet (Setaria italica L.) https://t.co/7DTDjXyUEa Drought stress is one of the most important abiotic factors limiting crop p…
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Supplemental Information

Descriptive statistical analysis of RNA-seq of 18 samples

DOI: 10.7287/peerj.preprints.26860v1/supp-1

Primers used for validating 10 DEGs by qRT-PCR

DOI: 10.7287/peerj.preprints.26860v1/supp-2

GO enrichment analysis of DEGs in M79 and E1 under normal conditions

DOI: 10.7287/peerj.preprints.26860v1/supp-3

GO enrichment analysis of DEGs in M79 and H1 under normal conditions

DOI: 10.7287/peerj.preprints.26860v1/supp-4

GO enrichment analysis of DEGs in M79 and E1 after drought treatment

DOI: 10.7287/peerj.preprints.26860v1/supp-5

GO enrichment analysis of DEGs in M79 and H1 after drought treatment

DOI: 10.7287/peerj.preprints.26860v1/supp-6

GO enrichment analysis of DEGs that were up-regulated in all three drought-treated cultivars

DOI: 10.7287/peerj.preprints.26860v1/supp-7

GO enrichment analysis of DEGs that were down-regulated in all three drought-treated cultivars

DOI: 10.7287/peerj.preprints.26860v1/supp-8

DEGs that were expressed in all three drought-treated cultivars

DOI: 10.7287/peerj.preprints.26860v1/supp-9

GO enrichment analysis of M79-specific DEGs after drought stress

DOI: 10.7287/peerj.preprints.26860v1/supp-10

GO enrichment analysis of E1-specific DEGs after drought stress

DOI: 10.7287/peerj.preprints.26860v1/supp-11

GO enrichment analysis of H1-specific DEGs after drought stress

DOI: 10.7287/peerj.preprints.26860v1/supp-12

KEGG analysis of M79-specific DEGs after drought stress

DOI: 10.7287/peerj.preprints.26860v1/supp-13

KEGG analysis of E1-specific DEGs after drought stress

DOI: 10.7287/peerj.preprints.26860v1/supp-14

KEGG analysis of H1-specific DEGs after drought stress

DOI: 10.7287/peerj.preprints.26860v1/supp-15

Functional classification of drought resistance-related DEGs in M79

DOI: 10.7287/peerj.preprints.26860v1/supp-16

Pearson correlation coefficients of physiological data and the expression data of photosynthesis-related DEGs

DOI: 10.7287/peerj.preprints.26860v1/supp-17

Distribution of gene expression (FPKM) in 18 samples after drought treatment

a: Density distribution; b: box-plot.

DOI: 10.7287/peerj.preprints.26860v1/supp-18

Venn diagrams of DEGs (up-regulated and down-regulated) of M79, E1 and H1 before drought treatment

DOI: 10.7287/peerj.preprints.26860v1/supp-19

Venn diagrams of DEGs (up-regulated and down-regulated) of M79, E1 and H1 after drought treatment

DOI: 10.7287/peerj.preprints.26860v1/supp-20

Additional Information

Competing Interests

Liyuan Hou, Qian Sun and Peng Xiang are employed by Vazyme Biotech Company Ltd. The authors are independent from the Vazyme Biotech Company Ltd. in study design, access to the collected data, responsibility for data analysis and interpretation, and the right to publish.

Author Contributions

Weiping Shi conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Jingye Cheng conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Xiaojie Wen conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Jixiang Wang performed the experiments, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Guanyan Shi contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Jiayan Yao contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Liyuan Hou contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Qian Sun contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Peng Xiang contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Xiangyang Yuan contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Shuqi Dong contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Pingyi Guo conceived and designed the experiments, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Jie Guo conceived and designed the experiments, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

Both raw data and code are included in the Supplemental Files.

Funding

This work was supported by grants from the Project of China Agriculuture Research System (CARS-06-13.5-A28), the National Key R&D Program of Shanxi Province (201703D211007), the Key Scientific and Technological Project of Shanxi Province (2015-TN-09), Science & Technology Innovation Foundation of Shanxi Agricultural University (2016YJ05), the Program for the Top Young Innovative Talents of Shanxi Agricultural University (TYIT201406). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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