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Supplemental Information

Structural models of WT and mutants in PDB format

The file contains the pdb files of all created models of EcoR124I HsdR, WT as well as of each mutant. All initial models used for molecular dynamics and the final equilibrated structure after molecular dynamics are included for each structure.

DOI: 10.7287/peerj.preprints.2680v1/supp-1

Additional Information

Competing Interests

Rudiger H Ettrich is an Academic Editor for PeerJ.

Author Contributions

Vitali Bialevich performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Dhiraj Sinha performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Katsiaryna Shamayeva performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, reviewed drafts of the paper.

Alena Guzanova performed the experiments, analyzed the data, prepared figures and/or tables, reviewed drafts of the paper.

David Řeha analyzed the data, prepared figures and/or tables, reviewed drafts of the paper.

Eva Csefalvay conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Jannette Carey conceived and designed the experiments, analyzed the data, wrote the paper, reviewed drafts of the paper.

Marie Weiserova conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Rüdiger H Ettrich conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

The raw data of experimental work is included in the manuscript as gels in figure 2 (A-D), as data points in figure 3 and 4, and as the efficiency of plating in table 1. The computational models of WT and the mutants have been supplied as a supplementary file.

Funding

This study was supported by the Czech Science Foundation (P207/12/2323). Access to modeling facilities was supported by the Czech research infrastructure for systems biology C4SYS (project no. LM2015055). Additionally, RE was supported by a Fulbright-Masaryk Scholarship. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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