Table S1: The nematode collagens identified in this work from species in the genus Caenorhabditis.
Article S1. The MIPhy model of gene family evolution.
Figure S1: Example species and gene trees.
Data from collagen analysis
The following files are contained in the tarball:
all_caen.col2.fas - collagen sequences from seven species of Caenorhabditis in fasta format.
MIPhy_scores.csv - comma separated file generated by MIPhy. (1) sequence identifier; (2) species identifier; (3) MIPhy cluster identifier; (4) Instability score.
withPheno.txt - MIPhy clusters that contained a C. elegans collagen with a major RNAi phenotype. (1) MIPhy cluster identifier; (2) Instability score.
withoutPheno.txt - MIPhy clusters that contained no C. elegans collagens with a major RNAi phenotype. (1) MIPhy cluster identifier; (2) Instability score.